The role of salt bridges on the temperature adaptation of aqualysin I, a thermostable subtilisin-like proteinase

被引:29
|
作者
Jonsdottir, Lilja B. [1 ]
Ellertsson, Brynjar Oe. [1 ]
Invernizzi, Gaetano [3 ]
Magnusdottir, Manuela [1 ]
Thorbjarnardottir, Sigriour H. [2 ]
Papaleo, Elena [3 ]
Kristjansson, Magnus M. [1 ]
机构
[1] Univ Iceland, Inst Sci, Dept Biochem, IS-101 Reykjavik, Iceland
[2] Univ Iceland, Inst Biol, IS-101 Reykjavik, Iceland
[3] Univ Copenhagen, Dept Biol, Struct Biol & NMR Lab, DK-2200 Copenhagen, Denmark
来源
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS | 2014年 / 1844卷 / 12期
关键词
Subtilisin-like; Salt bridges; Protein stability; Thermophilic; Protease; Molecular dynamics; ALKALINE SERINE-PROTEASE; COLD-ACTIVE ENZYME; ION-PAIRS; STABILITY; DYNAMICS; FLEXIBILITY; ELECTROSTATICS; DEHYDROGENASE; PURIFICATION; SIMULATIONS;
D O I
10.1016/j.bbapap.2014.08.011
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Differences in salt bridges are believed to be a structural hallmark of homologous enzymes from differently temperature-adapted organisms. Nevertheless, the role of salt bridges on structural stability is still controversial. While it is clear that most buried salt bridges can have a functional or structural role, the same cannot be firmly stated for ion pairs that are exposed on the protein surface. Salt bridges, found in X-ray structures, may not be stably formed in solution as a result of high flexibility or high desolvation penalty. More studies are thus needed to clarify the picture on salt bridges and temperature adaptation. We contribute here to this scenario by combining atomistic simulations and experimental mutagenesis of eight mutant variants of aqualysin I, a thermophilic subtilisin-like proteinase, in which the residues involved in salt bridges and not conserved in a psychrophilic homolog were systematically mutated. We evaluated the effects of those mutations on thermal stability and on the kinetic parameters. Overall, we show here that only few key charged residues involved in salt bridges really contribute to the enzyme thermal stability. This is especially true when they are organized in networks, as here attested by the D17N mutation, which has the most remarkable effect on stability. Other mutations had smaller effects on the properties of the enzyme indicating that most of the isolated salt bridges are not a distinctive trait related to the enhanced thermal stability of the thermophilic subtilase. (C) 2014 Elsevier B.V. All rights reserved.
引用
收藏
页码:2174 / 2181
页数:8
相关论文
共 50 条
  • [31] Effect of Subtilisin-like Proteinase of Bacillus pumilus 3–19 on Pseudomonas aeruginosa Biofilms
    Daniil Kabanov
    Nailia Khabipova
    Lia Valeeva
    Margarita Sharipova
    Alexey Rogov
    Svetlana Kuznetsova
    Irina Abaseva
    Ayslu Mardanova
    BioNanoScience, 2019, 9 : 515 - 520
  • [32] The effect of site-directed mutagenesis on cold adaptation of VPR;: a subtilisin-like serine proteinase from a psychrophilic Vibrio-species
    Sigurdardottir, AG
    Arnorsdottir, J
    Helgadottir, S
    Thorbjarnardottir, SH
    Eggertsson, G
    Kristjansson, MM
    FEBS JOURNAL, 2005, 272 : 175 - 176
  • [33] Purification of a subtilisin-like serine proteinase from recombinantBacillus subtilis during different phases of growth
    Ekaterina O. Mikhailova
    Nelly P. Balaban
    Ayslu M. Mardanova
    Nataliya L. Rudakova
    Olga N. Ilyinskaya
    Galina N. Rudenskaya
    Albert A. Rizvanov
    Margarita R. Sharipova
    Annals of Microbiology, 2009, 59 : 301 - 307
  • [34] Subtilisin-like proteinase secreted by the Bacillus pumilus KMM 62 strain at different growth stages
    A. M. Mardanova
    L. A. Malikova
    N. P. Balaban
    N. M. Zamatlyutdinova
    M. R. Sharipova
    Russian Journal of Bioorganic Chemistry, 2012, 38 : 203 - 210
  • [35] Isolation and characterization of a cDNA encoding a subtilisin-like serine proteinase (AhSUB) from Acanthamoeba healyi
    Hong, YC
    Kong, HH
    Ock, MS
    Kim, IS
    Chung, DI
    MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2000, 111 (02) : 441 - 446
  • [36] Effect of Subtilisin-like Proteinase of Bacillus pumilus 3-19 on Pseudomonas aeruginosa Biofilms
    Kabanov, Daniil
    Khabipova, Nailia
    Valeeva, Lia
    Sharipova, Margarita
    Rogov, Alexey
    Kuznetsova, Svetlana
    Abaseva, Irina
    Mardanova, Ayslu
    BIONANOSCIENCE, 2019, 9 (02) : 515 - 520
  • [37] Subtilisin-Like Proteinase Secreted by the Bacillus pumilus KMM 62 Strain at Different Growth Stages
    Mardanova, A. M.
    Malikova, L. A.
    Balaban, N. P.
    Zamatlyutdinova, N. M.
    Sharipova, M. R.
    RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY, 2012, 38 (02) : 203 - 210
  • [38] Use of nattokinase, a subtilisin-like serine proteinase, to accelerate proteolysis in Cheddar cheese during ripening
    Upadhyay, Vivek K.
    Kelly, Alan L.
    McSweeney, Paul L. H.
    LAIT, 2006, 86 (03): : 227 - 240
  • [39] Improvement of subtilisin-like serine alkaline protease by directed evolution for cold-adaptation
    KunCheng
    Lu, Fuping
    Li, Ming
    Liang, Xiaomei
    2010 4TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICAL ENGINEERING (ICBBE 2010), 2010,
  • [40] Purification of a subtilisin-like serine proteinase from recombinant Bacillus subtilis during different phases of growth
    Mikhailova, Ekaterina O.
    Balabani, Nelly P.
    Mardanova, Ayslu M.
    Rudakova, Nataliya L.
    Ilyinskaya, Olga N.
    Rudenskaya, Galina N.
    Rizvanov, Albert A.
    Sharipova, Margarita R.
    ANNALS OF MICROBIOLOGY, 2009, 59 (02) : 301 - 307