User-centric genomics infrastructure: trends and technologies

被引:2
|
作者
Krishna, Ritesh [1 ]
Elisseev, Vadim [1 ]
机构
[1] Ibm Res Europe, Hartree Ctr STFC Lab, Warrington WA4 4AD, Cheshire, England
关键词
bioinformatics; genomics; high performance computing; cloud; big data; infrastructure; BIG DATA; CONTAINERS;
D O I
10.1139/gen-2020-0096
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Genomics is both a data- and compute-intensive discipline. The success of genomics depends on an adequate informatics infrastructure that can address growing data demands and enable a diverse range of resource-intensive computational activities. Designing a suitable infrastructure is a challenging task, and its success largely depends on its adoption by users. In this article, we take a user-centric view of the genomics, where users are bioinformaticians, computational biologists, and data scientists. We try to take their point of view on how traditional computational activities for genomics are expanding due to data growth, as well as the introduction of big data and cloud technologies. The changing landscape of computational activities and new user requirements will influence the design of future genomics infrastructures.
引用
收藏
页码:467 / 475
页数:9
相关论文
共 50 条
  • [21] Routing in User-Centric Networks
    Xing, Xiaoshuang
    Jing, Tao
    Zhou, Wei
    Cheng, Xiuzhen
    Huo, Yan
    Liu, Hang
    IEEE COMMUNICATIONS MAGAZINE, 2014, 52 (09) : 44 - 51
  • [22] User-Centric Similarity Search
    Georgoulas, Konstantinos
    Vlachou, Akrivi
    Doulkeridis, Christos
    Kotidis, Yannis
    IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 2017, 29 (01) : 200 - 213
  • [23] User-centric broadband networks
    Van Bogaert, J
    Tournassoud, P
    ALCATEL TELECOMMUNICATIONS REVIEW, 2005, (01): : 26 - 31
  • [24] On user-centric memetic algorithms
    Ana Reyes Badillo
    Juan Jesús Ruiz
    Carlos Cotta
    Antonio J. Fernández-Leiva
    Soft Computing, 2013, 17 : 285 - 300
  • [25] On the User-centric Evolution of Mobile Money Technologies in Developing Nations: Successes and Lessons
    Victor, Dibia
    AMCIS 2014 PROCEEDINGS, 2014,
  • [26] User-Centric Organization of Search Results
    Gao, Byron J.
    Buttler, David
    Anastasiu, David C.
    Wang, Shuaiqiang
    Zhang, Peng
    Jan, Joey
    IEEE INTERNET COMPUTING, 2013, 17 (03) : 52 - 59
  • [27] User-Centric Quality of Service Provisioning
    Culverhouse, M. E.
    Ghita, B. V.
    Reynolds, P.
    2011 IEEE 36TH CONFERENCE ON LOCAL COMPUTER NETWORKS (LCN), 2011, : 35 - 41
  • [28] Agile IT: Thinking in User-Centric Models
    Margaria, Tiziana
    Steffen, Bernhard
    LEVERAGING APPLICATIONS OF FORMAL METHODS, VERIFICATION AND VALIDATION, PROCEEDINGS, 2008, 17 : 490 - +
  • [29] User-Centric Cloud Intermediation Services
    Nogueira, Luis
    Coelho, Jorge
    INTELLIGENT DISTRIBUTED COMPUTING VIII, 2015, 570 : 147 - 153
  • [30] The perverse horrors of user-centric design
    Phibes, TAD
    EXPERT SYSTEMS, 2002, 19 (05) : 295 - 298