Ab initio molecular dynamics of retinals

被引:48
|
作者
Bifone, A
deGroot, HJM
Buda, F
机构
[1] SCUOLA NORMALE SUPER PISA, LAB FORUM, IST NAZL FIS MAT, I-56126 PISA, ITALY
[2] LEIDEN UNIV, GORLAEUS LAB, LEIDEN INST CHEM, 2300 RA LEIDEN, NETHERLANDS
关键词
D O I
10.1016/0009-2614(95)01312-1
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A Car-Paninello ab initio molecular dynamics calculation is presented of all-trans and 11-cis retinals. The minimum energy configurations of the two isomers have been determined by a simulated annealing procedure. The backbone conjugation is properly described within the local density approximation. The vibrational frequencies have been determined from the molecular dynamics trajectories. The theoretical results show an excellent agreement with experiment and provide grounds for an analysis of the retinal vibrations in terms of localized modes.
引用
收藏
页码:165 / 172
页数:8
相关论文
共 50 条
  • [21] ACTION-DERIVED AB INITIO MOLECULAR DYNAMICS
    Jun, S.
    Pendurti, S.
    Lee, I. -H.
    Kim, S. Y.
    Park, H. S.
    Kim, Y. -H.
    INTERNATIONAL JOURNAL OF APPLIED MECHANICS, 2009, 1 (03) : 469 - 482
  • [22] Ab initio molecular dynamics with density functional theory
    Tse, JS
    ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 2002, 53 : 249 - 290
  • [23] Ab initio molecular dynamics of expanded liquid sodium
    Bickham, SR
    Pfaffenzeller, O
    Collins, LA
    Kress, JD
    Hohl, D
    PHYSICAL REVIEW B, 1998, 58 (18) : R11813 - R11816
  • [24] Ab initio molecular dynamics studies of metal clusters
    Kumar, V
    BULLETIN OF MATERIALS SCIENCE, 1997, 20 (06) : 745 - 754
  • [25] Ab initio molecular dynamics study of solid nitromethane
    Tuckerman, M. E.
    Klein, M. L.
    Chemical Physics Letters, 283 (03):
  • [26] Ab initio molecular dynamics study of solid nitromethane
    Tuckerman, ME
    Klein, ML
    CHEMICAL PHYSICS LETTERS, 1998, 283 (3-4) : 147 - 151
  • [27] Ab initio molecular dynamics with a continuum solvation model
    Senn, HM
    Margl, PM
    Schmid, R
    Ziegler, T
    Blöchl, PE
    JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (03): : 1089 - 1100
  • [28] Ab initio molecular dynamics of hydrogen on tungsten surfaces
    Rodriguez-Fernandez, Alberto
    Bonnet, Laurent
    Larregaray, Pascal
    Diez Muino, Ricardo
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2021, 23 (13) : 7919 - 7925
  • [29] Ab initio molecular dynamics studies of metal clusters
    Vijay Kumar
    Bulletin of Materials Science, 1997, 20 : 745 - 754
  • [30] Vibrational and ab initio molecular dynamics studies of bradykinin
    Swiech, Dominika
    Kubisiak, Piotr
    Andrzejak, Marcin
    Borowski, Piotr
    Proniewicz, Edyta
    JOURNAL OF MOLECULAR STRUCTURE, 2016, 1116 : 272 - 278