RNA Sequencing Data Sets and Their Whole-Genome Sequence Assembly of Dengue Virus from Three Serial Passages in Vero Cells

被引:1
|
作者
Wongsurawat, Thidathip [1 ,2 ]
Punyadee, Nuntaya [3 ,4 ]
Jenjaroenpun, Piroon [1 ,2 ]
Mairiang, Dumrong [3 ,4 ,5 ]
Tangthawornchaikul, Nattaya [3 ,4 ,5 ]
Malasit, Prida [3 ,4 ,5 ]
Avirutnan, Panisadee [3 ,4 ]
Suriyaphol, Prapat [1 ,2 ]
Chin-inmanu, Kwanrutai [1 ,2 ]
机构
[1] Mahidol Univ, Siriraj Hosp, Div Bioinformat & Data Management Res, Res Grp,Fac Med, Bangkok, Thailand
[2] Mahidol Univ, Siriraj Hosp, Fac Med, Res Network Div,Res Dept, Bangkok, Thailand
[3] Mahidol Univ, Siriraj Hosp, Fac Med, Div Dengue Hemorrhag Fever Res, Bangkok, Thailand
[4] Mahidol Univ, Siriraj Hosp, Fac Med, Siriraj Ctr Res Excellence Dengue & Emerging Path, Bangkok, Thailand
[5] Natl Sci & Technol Dev Agcy, Natl Ctr Genet Engn & Biotechnol, Med Mol Biotechnol Res Grp, Mol Biol Dengue & Flaviviruses Res Team, Bangkok, Thailand
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2021年 / 10卷 / 17期
关键词
D O I
10.1128/MRA.00145-21
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
We present RNA sequencing data sets and their genome sequence assembly for dengue virus that was isolated from a patient with dengue hemorrhagic fever and serially propagated in Vero cells. RNA sequencing data obtained from the first, third, and fifth passages and their corresponding whole-genome sequences are provided in this work.
引用
收藏
页数:3
相关论文
共 50 条
  • [1] Exact algorithms for haplotype assembly from whole-genome sequence data
    Chen, Zhi-Zhong
    Deng, Fei
    Wang, Lusheng
    [J]. BIOINFORMATICS, 2013, 29 (16) : 1938 - 1945
  • [2] Optimal algorithms for haplotype assembly from whole-genome sequence data
    He, Dan
    Choi, Arthur
    Pipatsrisawat, Knot
    Darwiche, Adnan
    Eskin, Eleazar
    [J]. BIOINFORMATICS, 2010, 26 (12) : i183 - i190
  • [3] An MCMC algorithm for haplotype assembly from whole-genome sequence data
    Bansal, Vikas
    Halpern, Aaron L.
    Axelrod, Nelson
    Bafna, Vineet
    [J]. GENOME RESEARCH, 2008, 18 (08) : 1336 - 1346
  • [4] Whole-genome sequencing of eukaryotes: From sequencing of DNA fragments to a genome assembly
    K. S. Zadesenets
    N. I. Ershov
    N. B. Rubtsov
    [J]. Russian Journal of Genetics, 2017, 53 : 631 - 639
  • [5] Whole-Genome Sequencing of Eukaryotes: From Sequencing of DNA Fragments to a Genome Assembly
    Zadesenets, K. S.
    Ershov, N. I.
    Rubtsov, N. B.
    [J]. RUSSIAN JOURNAL OF GENETICS, 2017, 53 (06) : 631 - 639
  • [6] Relationship Estimation from Whole-Genome Sequence Data
    Li, Hong
    Glusman, Gustavo
    Hu, Hao
    Shankaracharya
    Caballero, Juan
    Hubley, Robert
    Witherspoon, David
    Guthery, Stephen L.
    Mauldin, Denise E.
    Jorde, Lynn B.
    Hood, Leroy
    Roach, Jared C.
    Huff, Chad D.
    [J]. PLOS GENETICS, 2014, 10 (01):
  • [7] Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data
    Kosai Al-Nakeeb
    Thomas Nordahl Petersen
    Thomas Sicheritz-Pontén
    [J]. BMC Bioinformatics, 18
  • [8] Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data
    Al-Nakeeb, Kosai
    Petersen, Thomas Nordahl
    Sicheritz-Ponten, Thomas
    [J]. BMC BIOINFORMATICS, 2017, 18
  • [9] Blood group typing from whole-genome sequencing data
    Paganini, Julien
    Nagy, Peter L.
    Rouse, Nicholas
    Gouret, Philippe
    Chiaroni, Jacques
    Picard, Chistophe
    Di Cristofaro, Julie
    [J]. PLOS ONE, 2020, 15 (11):
  • [10] Clinical use of targeted high-throughput whole-genome sequencing for a dengue virus variant
    Lee, Chun Kiat
    Chua, Cui Wen
    Chiu, Lily
    Koay, Evelyn Siew-Chuan
    [J]. CLINICAL CHEMISTRY AND LABORATORY MEDICINE, 2017, 55 (09) : E209 - E212