Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data

被引：0
|
作者：
Kosai Al-Nakeeb
Thomas Nordahl Petersen
Thomas Sicheritz-Pontén
机构：
[1] Technical University of Denmark,Department of Bio and Health Informatics
来源：
BMC Bioinformatics | / 18卷
关键词：
Mitochondrial dna; K-mer; Next-generation sequencing; De novo assembly;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data
    Al-Nakeeb, Kosai
    Petersen, Thomas Nordahl
    Sicheritz-Ponten, Thomas
    [J]. BMC BIOINFORMATICS, 2017, 18
  • [2] Whole-Genome Sequencing of Eukaryotes: From Sequencing of DNA Fragments to a Genome Assembly
    Zadesenets, K. S.
    Ershov, N. I.
    Rubtsov, N. B.
    [J]. RUSSIAN JOURNAL OF GENETICS, 2017, 53 (06) : 631 - 639
  • [3] Whole-genome sequencing of eukaryotes: From sequencing of DNA fragments to a genome assembly
    K. S. Zadesenets
    N. I. Ershov
    N. B. Rubtsov
    [J]. Russian Journal of Genetics, 2017, 53 : 631 - 639
  • [4] The present and future of de novo whole-genome assembly
    Sohn, Jang-il
    Nam, Jin-Wu
    [J]. BRIEFINGS IN BIOINFORMATICS, 2018, 19 (01) : 23 - 40
  • [5] ALLPATHS: De novo assembly of whole-genome shotgun microreads
    Butler, Jonathan
    MacCallum, Iain
    Kleber, Michael
    Shlyakhter, Ilya A.
    Belmonte, Matthew K.
    Lander, Eric S.
    Nusbaum, Chad
    Jaffe, David B.
    [J]. GENOME RESEARCH, 2008, 18 (05) : 810 - 820
  • [6] Whole-Genome Sequencing and De Novo Assembly of Malassezia pachydermatis Isolated from the Ear Canal of a Dog with Otitis
    D'Andreano, S.
    Vines, J.
    Francino, O.
    [J]. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (21):
  • [7] Whole-genome DNA sequencing
    Myers, G
    [J]. COMPUTING IN SCIENCE & ENGINEERING, 1999, 1 (03) : 33 - 43
  • [8] Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma
    Francino, O.
    Perez, D.
    Vines, J.
    Fonticoba, R.
    Madronero, S.
    Meroni, G.
    Martino, P.
    Martinez, S.
    Cusco, A.
    Fabregas, N.
    Migura-Garcia, L.
    Ferrer, L.
    [J]. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (16):
  • [9] Whole-Genome Sequencing and De Novo Assembly of 67 Staphylococcus pseudintermedius Strains Isolated from the Skin of Healthy Dogs
    Fabregas, Norma
    Perez, Daniel
    Vines, Joaquim
    Fonticoba, Rocio
    Cusco, Anna
    Migura-Garcia, Lourdes
    Ferrer, Lluis
    Francino, Olga
    [J]. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2022, 11 (03):
  • [10] De novo genome assembly for third generation sequencing data
    Forc, Mateusz
    Kusmirek, Wiktor
    Nowak, Robert M.
    [J]. PHOTONICS APPLICATIONS IN ASTRONOMY, COMMUNICATIONS, INDUSTRY, AND HIGH-ENERGY PHYSICS EXPERIMENTS 2018, 2018, 10808
12345