Whole-Genome Sequencing Reveals Age-Specific Changes in the Human Blood Microbiota

被引:3
|
作者
Lee, Eun-Ju [1 ]
Sung, Joohon [2 ]
Kim, Hyung-Lae [3 ,4 ]
Kim, Han-Na [1 ,5 ]
机构
[1] Sungkyunkwan Univ, Med Res Inst, Sch Med, Kangbuk Samsung Hosp, Seoul 03181, South Korea
[2] Seoul Natl Univ, Sch Publ Hlth, Dept Epidemiol, Seoul 08826, South Korea
[3] Ewha Womans Univ, Dept Biochem, Coll Med, Seoul 07804, South Korea
[4] PDXen Biosyst Inc, Funct Genome Inst, Daejeon 34129, South Korea
[5] Sungkyunkwan Univ, Dept Clin Res Design & Evaluat, SAIHST, Seoul 06355, South Korea
来源
JOURNAL OF PERSONALIZED MEDICINE | 2022年 / 12卷 / 06期
基金
新加坡国家研究基金会;
关键词
blood microbiota; whole-genome sequencing; unmapped reads; age; GUT MICROBIOME; NONHUMAN SEQUENCES; GLYCOSPHINGOLIPIDS; MUTATIONS; DIVERSITY; MICE; LPS;
D O I
10.3390/jpm12060939
中图分类号
R19 [保健组织与事业(卫生事业管理)];
学科分类号
摘要
Based on several reports that indicate the presence of blood microbiota in patients with diseases, we became interested in identifying the presence of bacteria in the blood of healthy individuals. Using 37 samples from 5 families, we extracted sequences that were not mapped to the human reference genome and mapped them to the bacterial reference genome for characterization. Proteobacteria account for more than 95% of the blood microbiota. The results of clustering by means of principal component analysis showed similar patterns for each age group. We observed that the class Gammaproteobacteria was significantly higher in the elderly group (over 60 years old), whereas the arcsine square root-transformed relative abundance of the classes Alphaproteobacteria, Deltaproteobacteria, and Clostridia was significantly lower (p < 0.05). In addition, the diversity among the groups showed a significant difference (p < 0.05) in the elderly group. This result provides meaningful evidence of a consistent phenomenon that chronic diseases associated with aging are accompanied by metabolic endotoxemia and chronic inflammation.
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页数:14
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