Genome-Wide Identification and Characterization of G2-Like Transcription Factor Genes in Moso Bamboo (Phyllostachys edulis)

被引:12
|
作者
Wu, Ruihua [1 ]
Guo, Lin [1 ]
Wang, Ruoyu [2 ]
Zhang, Qian [3 ]
Yao, Hongjun [1 ]
机构
[1] Beijing Forestry Univ, Coll Biol Sci & Technol, Beijing 100083, Peoples R China
[2] Guanghua Qidi Sch, Shanghai 201799, Peoples R China
[3] Chinese Acad Sci, Inst Microbiol, Beijing 100020, Peoples R China
来源
MOLECULES | 2022年 / 27卷 / 17期
基金
中国国家自然科学基金;
关键词
moso bamboo; GLK genes; phylogenetic relationship; motif analysis; expression profiles; REGULATE CHLOROPLAST DEVELOPMENT; FACTORS COORDINATE; ARABIDOPSIS; FAMILY; BIOGENESIS; EXPRESSION; EVOLUTION; ELEMENTS; DATABASE;
D O I
10.3390/molecules27175491
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
G2-like (GLK) transcription factors contribute significantly and extensively in regulating chloroplast growth and development in plants. This study investigated the genome-wide identification, phylogenetic relationships, conserved motifs, promoter cis-elements, MCScanX, divergence times, and expression profile analysis of PeGLK genes in moso bamboo (Phyllostachys edulis). Overall, 78 putative PeGLKs (PeGLK1-PeGLK78) were identified and divided into 13 distinct subfamilies. Each subfamily contains members displaying similar gene structure and motif composition. By synteny analysis, 42 orthologous pairs and highly conserved microsynteny between regions of GLK genes across moso bamboo and maize were found. Furthermore, an analysis of the divergence times indicated that PeGLK genes had a duplication event around 15 million years ago (MYA) and a divergence happened around 38 MYA between PeGLK and ZmGLK. Tissue-specific expression analysis showed that PeGLK genes presented distinct expression profiles in various tissues, and many members were highly expressed in leaves. Additionally, several PeGLKs were significantly up-regulated under cold stress, osmotic stress, and MeJA and GA treatment, implying that they have a likelihood of affecting abiotic stress and phytohormone responses in plants. The results of this study provide a comprehensive understanding of the moso bamboo GLK gene family, as well as elucidating the potential functional characterization of PeGLK genes.
引用
收藏
页数:25
相关论文
共 50 条
  • [21] Identification and Characterization of PRE Genes in Moso Bamboo (Phyllostachys edulis)
    Zheng, Sujin
    Shin, Kihye
    Lin, Wenxiong
    Wang, Wenfei
    Yang, Xuelian
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (08)
  • [22] Correction to: Genome-wide Identification of Trihelix Genes in Moso Bamboo (Phyllostachys edulis) and Their Expression in Response to Abiotic Stress
    Hongyan Gao
    Rong Huang
    Jun Liu
    Zhimin Gao
    Hansheng Zhao
    Xueping Li
    Journal of Plant Growth Regulation, 2019, 38 : 1616 - 1616
  • [23] Genome-Wide Identification of NAP1 and Function Analysis in Moso Bamboo (Phyllostachys edulis)
    Zhang, Yaxing
    Zhang, Jun
    Yang, Deming
    Jin, Yandong
    Liu, Xuqing
    Zhang, Zeyu
    Gu, Lianfeng
    Zhang, Hangxiao
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (12)
  • [24] Genome-wide identification and expression analysis of the IQD gene family in moso bamboo (Phyllostachys edulis)
    Wu, Min
    Li, Yuan
    Chen, Danmei
    Liu, Huanlong
    Zhu, Dongyue
    Xiang, Yan
    SCIENTIFIC REPORTS, 2016, 6
  • [25] Genome-wide identification and expression analysis of the IQD gene family in moso bamboo (Phyllostachys edulis)
    Min Wu
    Yuan Li
    Danmei Chen
    Huanlong Liu
    Dongyue Zhu
    Yan Xiang
    Scientific Reports, 6
  • [26] Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis)
    Huanlong Liu
    Min Wu
    Dongyue Zhu
    Feng Pan
    Yujiao Wang
    Yue Wang
    Yan Xiang
    BMC Plant Biology, 17
  • [27] Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis)
    Liu, Huanlong
    Wu, Min
    Zhu, Dongyue
    Pan, Feng
    Wang, Yujiao
    Wang, Yue
    Xiang, Yan
    BMC PLANT BIOLOGY, 2017, 17
  • [28] Genome-Wide Identification and Analysis of ZF-HD Gene Family in Moso Bamboo (Phyllostachys edulis)
    Huang, Feiyi
    Wang, Jiaxin
    Tang, Chao
    PLANTS-BASEL, 2023, 12 (23):
  • [29] Genome-wide characterization and evolution analysis of long terminal repeat retroelements in moso bamboo (Phyllostachys edulis)
    Mingbing Zhou
    Bingjie Hu
    Yihang Zhu
    Tree Genetics & Genomes, 2017, 13
  • [30] Genome-Wide Analysis of the AP2/ERF Transcription Factors Family and the Expression Patterns of DREB Genes in Moso Bamboo (Phyllostachys edulis)
    Wu, Huili
    Lv, Hao
    Li, Long
    Liu, Jun
    Mu, Shaohua
    Li, Xueping
    Gao, Jian
    PLOS ONE, 2015, 10 (05):