Database on the structure of small ribosomal subunit RNA

被引:91
|
作者
VandePeer, Y [1 ]
Nicoldi, S [1 ]
DeRijk, P [1 ]
DeWachter, R [1 ]
机构
[1] UNIV ANTWERP,DEPT BIOCHEM,B-2610 ANTWERP,BELGIUM
关键词
D O I
10.1093/nar/24.1.86
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Antwerp database on small ribosomal subunit RNA offers over 4300 nucleotide sequences (August 1995). All these sequences are stored in the form of an alignment based on the adopted secondary structure model, which in turn is corroborated by the observation of compensating substitutions in the alignment. Besides the primary and secondary structure information, literature references, accession numbers and detailed taxonomic information are also compiled. The complete database is made available to the scientific community through anonymous ftp and World Wide Web (WWW).
引用
收藏
页码:86 / 91
页数:6
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