The Sphagnum Genome Project: A New Model for Ecological and Evolutionary Genomics
被引:23
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作者:
Shaw, A. J.
论文数: 0引用数: 0
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机构:
Duke Univ, Durham, NC USADuke Univ, Durham, NC USA
Shaw, A. J.
[1
]
Schmutz, J.
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机构:
HudsonAlpha Inst Biotechnol, Huntsville, AL USADuke Univ, Durham, NC USA
Schmutz, J.
[2
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Devos, N.
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机构:
Duke Univ, Durham, NC USADuke Univ, Durham, NC USA
Devos, N.
[1
]
Shu, S.
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机构:
Joint Genome Inst, Dept Energy, Walnut Creek, CA USADuke Univ, Durham, NC USA
Shu, S.
[3
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Carrell, A. A.
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机构:
Duke Univ, Durham, NC USA
Oak Ridge Natl Lab, Oak Ridge, TN USADuke Univ, Durham, NC USA
Carrell, A. A.
[1
,4
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Weston, D. J.
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机构:
Oak Ridge Natl Lab, Oak Ridge, TN USADuke Univ, Durham, NC USA
Weston, D. J.
[4
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机构:
[1] Duke Univ, Durham, NC USA
[2] HudsonAlpha Inst Biotechnol, Huntsville, AL USA
[3] Joint Genome Inst, Dept Energy, Walnut Creek, CA USA
[4] Oak Ridge Natl Lab, Oak Ridge, TN USA
来源:
GENOMES AND EVOLUTION OF CHAROPHYTES, BRYOPHYTES, LYCOPHYTES AND FERNS
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2016年
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78卷
关键词:
RNA-SEQ;
LAND PLANTS;
BRYOPHYTE;
SPHAGNACEAE;
GENERATION;
ORIGIN;
BOGS;
TOOL;
D O I:
10.1016/bs.abr.2016.01.003
中图分类号:
Q94 [植物学];
学科分类号:
071001 ;
摘要:
The inception of the Sphagnum (peat moss) genome project marks the first plant-based sequencing project aimed specifically at carbon cycling genomics in a plant system relevant to ecological and evolutionary genomics. Sphagnum provides considerable intra-and interspecific variation at the nucleotide level, and in physiology, morphology, net production, decomposition and carbon accumulation (peat formation). Because of the large number of peat moss species, their diversity in mating systems, and clear patterns of niche differentiation, Sphagnum provides an exceptionally valuable complement to Physcomitrella patens and Ceratodon purpureus as moss models for genomic research. Here we review the organismal biology of Sphagnum including phylogeny, life cycle, mating systems, ecology and niche differentiation. We include the current state of Sphagnum genomic resources, in vitro methods and germplasm. A use-case is provided to address questions concerning epigenetics and reproduction.
机构:
Univ Idaho, Dept Fish & Wildlife Sci, 875 Perimeter Dr MS 1136, Moscow, ID 83844 USAUniv Idaho, Dept Fish & Wildlife Sci, 875 Perimeter Dr MS 1136, Moscow, ID 83844 USA
Andrews, Kimberly R.
Good, Jeffrey M.
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机构:
Univ Montana, Div Biol Sci, 32 Campus Dr HS104, Missoula, MT 59812 USAUniv Idaho, Dept Fish & Wildlife Sci, 875 Perimeter Dr MS 1136, Moscow, ID 83844 USA
Good, Jeffrey M.
Miller, Michael R.
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h-index: 0
机构:
Univ Calif Davis, Dept Anim Sci, One Shields Ave, Davis, CA 95616 USAUniv Idaho, Dept Fish & Wildlife Sci, 875 Perimeter Dr MS 1136, Moscow, ID 83844 USA
Miller, Michael R.
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机构:
Luikart, Gordon
Hohenlohe, Paul A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Idaho, Dept Biol Sci, Inst Bioinformat & Evolutionary Studies, Moscow, ID 83843 USAUniv Idaho, Dept Fish & Wildlife Sci, 875 Perimeter Dr MS 1136, Moscow, ID 83844 USA
机构:
Colorado State Univ, Dept Bioagr Sci, Ft Collins, CO 80523 USA
Colorado State Univ, Grad Degree Program Ecol, Ft Collins, CO 80523 USAColorado State Univ, Dept Bioagr Sci, Ft Collins, CO 80523 USA
McKay, John K.
Stinchcombe, John R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Toronto, Dept Ecol & Evolutionary Biol, Toronto, ON M5S 3B2, Canada
Univ Toronto, Ctr Anal Genome Evolut & Funct, Toronto, ON M5S 3B2, CanadaColorado State Univ, Dept Bioagr Sci, Ft Collins, CO 80523 USA
机构:
NYU, Dept Biol, Ctr Genom & Syst Biol, 12 Waverly Pl, New York, NY 10003 USANYU, Dept Biol, Ctr Genom & Syst Biol, 12 Waverly Pl, New York, NY 10003 USA
Zaidem, Maricris L.
Groen, Simon C.
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h-index: 0
机构:
NYU, Dept Biol, Ctr Genom & Syst Biol, 12 Waverly Pl, New York, NY 10003 USANYU, Dept Biol, Ctr Genom & Syst Biol, 12 Waverly Pl, New York, NY 10003 USA
Groen, Simon C.
Purugganan, Michael D.
论文数: 0引用数: 0
h-index: 0
机构:
NYU, Dept Biol, Ctr Genom & Syst Biol, 12 Waverly Pl, New York, NY 10003 USA
New York Univ Abu Dhabi, NYU Abu Dhabi Res Inst, Ctr Genom & Syst Biol, Abu Dhabi, U Arab EmiratesNYU, Dept Biol, Ctr Genom & Syst Biol, 12 Waverly Pl, New York, NY 10003 USA