Genome wide analysis of Mycobacterium leprae for identification of putative microRNAs and their possible targets in human

被引:0
|
作者
Nath, Durbba [1 ]
Chakraborty, Supriyo [1 ]
机构
[1] Assam Univ, Dept Biotechnol, Silchar 788011, Assam, India
关键词
MicroRNA prediction; miRNA targets; Gene network; Functional annotation; Bioinformatics; SMALL RNAS; WEB SERVER; PREDICTION; RESISTANCE; EXPRESSION; DECAY; MIRNA; HOST; SIZE;
D O I
10.1007/s11756-021-00778-x
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The pathogen Mycobacterium leprae is the root cause of the dire Hansen's disease, commonly known as Leprosy. Mycobacterium leprae is a distinct species within the genus as it causes peripheral nerve damage. The microRNAs (miRNAs) can effectively regulate the transcripts at the stages of transcription and translation. Although authenticating the existence and roles of microRNAs in bacteria necessitate intensive research, a few reports on bacterial microRNAs were published. In this in silico study, the genome wide investigation of Mycobacterium leprae led to the identification of 30 putative mature microRNAs in the bacterium. Several reports manifest the transmittance of bacterial small RNAs to host cytoplasm and they subsequently target host cellular mRNA molecules. The mature microRNAs predicted in M. leprae might possibly degrade/ inhibit 297 mRNAs in human. Further, the target human genes were subjected to gene network analysis and functional annotation. It was evident that the central mediators of the target gene network were involved in host defence responses to pathogen. A few target genes executed the pivotal processes of nervous system, morphogenesis, homeostatsis, transcription factor binding, cell cycle and cell death.
引用
收藏
页码:2437 / 2454
页数:18
相关论文
共 50 条
  • [31] Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis
    Junhong Zhang
    Shougong Zhang
    Suying Han
    Tao Wu
    Xinmin Li
    Wanfeng Li
    Liwang Qi
    Planta, 2012, 236 : 647 - 657
  • [32] Genome-wide analysis and identification of microRNAs in Medicago truncatula under aluminum stress
    Lu, Zhongjie
    Yang, Zhengyu
    Tian, Zheng
    Gui, Qihui
    Dong, Rui
    Chen, Chao
    FRONTIERS IN PLANT SCIENCE, 2023, 14
  • [33] In silico Identification of Putative Drug Targets in Mycobacterium ulcerans Virulence Proteins
    Mohinani, Taruna
    Saxena, Aditya
    Singh, Shoor Vir
    Pathak, Amita
    LETTERS IN DRUG DESIGN & DISCOVERY, 2023, 20 (12) : 2003 - 2017
  • [34] Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation
    Feng Xu
    Qian Liu
    Luying Chen
    Jiebin Kuang
    Thomas Walk
    Jinxiang Wang
    Hong Liao
    BMC Genomics, 14
  • [35] Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa
    Zhou, Liguo
    Liu, Yunhua
    Liu, Zaochang
    Kong, Deyan
    Duan, Mei
    Luo, Lijun
    JOURNAL OF EXPERIMENTAL BOTANY, 2010, 61 (15) : 4157 - 4168
  • [36] Genome-Wide Identification and Analysis of Drought-Responsive Genes and MicroRNAs in Tobacco
    Yin, Fuqiang
    Qin, Cheng
    Gao, Jian
    Liu, Ming
    Luo, Xirong
    Zhang, Wenyou
    Liu, Hongjun
    Liao, Xinhui
    Shen, Yaou
    Mao, Likai
    Zhang, Zhiming
    Lin, Haijian
    Luebberstedt, Thomas
    Pan, Guangtang
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2015, 16 (03) : 5714 - 5740
  • [37] Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation
    Xu, Feng
    Liu, Qian
    Chen, Luying
    Kuang, Jiebin
    Walk, Thomas
    Wang, Jinxiang
    Liao, Hong
    BMC GENOMICS, 2013, 14
  • [38] Genome-wide identification of CRISPR/Cas9 off-targets in human genome
    Duan, Jinzhi
    Lu, Guangqing
    Xie, Zhan
    Lou, Mingliang
    Luo, Jiao
    Guo, Lei
    Zhang, Yu
    CELL RESEARCH, 2014, 24 (08) : 1009 - 1012
  • [39] Genome wide identification of chilling responsive microRNAs in Prunus persica
    Barakat, Abdelali
    Sriram, Aditya
    Park, Joseph
    Zhebentyayeva, Tetyana
    Main, Dorrie
    Abbott, Albert
    BMC GENOMICS, 2012, 13
  • [40] Genome-wide identification of CRISPR/Cas9 off-targets in human genome
    Jinzhi Duan
    Guangqing Lu
    Zhan Xie
    Mingliang Lou
    Jiao Luo
    Lei Guo
    Yu Zhang
    Cell Research, 2014, 24 : 1009 - 1012