Bilastine Based Drugs as SARS-CoV-2 Protease Inhibitors: Molecular Docking, Dynamics, and ADMET Related Studies

被引:8
|
作者
Kumer, Ajoy [1 ,2 ,3 ]
Chakma, Unesco
Matin, Mohammed M. [4 ]
机构
[1] European Univ Bangladesh, Dept Chem, Dhaka 1216, Bangladesh
[2] Bangladesh Univ Engn & Technol, Dept Chem, Dhaka 1000, Bangladesh
[3] European Univ Bangladesh, Dept Elect & Elect Engn, Dhaka 1216, Bangladesh
[4] Univ Chittagong, Dept Chem, Bioorgan & Med Chem Lab, Chittagong 4331, Bangladesh
来源
关键词
Inhibition constant; Drug-likeness; Molecular docking; Molecular Dynamics; SARS-CoV-2; DERIVATIVES; DESIGN; POTENT; SAR;
D O I
10.17807/orbital.v14i1.1642
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Bilastine drugs, structurally piperidine-1-carboxylate and sulfonyloxyethyl carboxylate derivatives, have significantly been employed as the medication of second-generation antihistamine drugs, and are used for the treatment of allergic rhinoconjunctivities and urticarial (hives). The bilastine drugs, composed of benzene carboxylate, propanoate, carboxylate, methyl-sulfonate, propanoic acid, butanoic acid, and pentanoic acid derivatives, were investigated through computational tools against SARS-CoV-2. The COVID-19 virus consists of five proteases where the curial function is performed by main proteases (M-pro) and Spike proteases (S-pro). The M-pro and S-pro were selected for calculation of molecular docking by these bilastine drugs which showed higher binding energy (<-6.5 kcal/mol) for both proteases. The main carboxylic acid group in bilastine drugs is found the primary key for a high binding score to show the large binding affinity with M-pro and S-pro, and is highly responsible for forming the hydrogen bond although the various hydrophobic bonds were produced as a weak interaction. For justification, the stability of molecular docked ligand-protein complexes was investigated with molecular dynamics. It showed that the root mean square deviation (RMSD) and root mean square fluctuation (RMSF) of all these drugs were below the 0.9 angstrom after residue interaction. Moreover, the HOMO-LUMO gap, hardness, and softness provided full details for their chemical reactivity. In this view, the pharmacokinetics and Lipinski rule were calculated, and all of these molecules had satisfied the Lipinski rule. Finally, using the admetSAR online database, absorption, distribution, metabolism, excretion, and toxicity have been calculated which indicated that these bilastine drugs are non-carcinogenic and less harmful for both aquatic and non-aquatic species. [GRAPHICS]
引用
收藏
页码:15 / 23
页数:9
相关论文
共 50 条
  • [1] Identification of musk compounds as inhibitors of the main SARS-CoV-2 protease by molecular docking and molecular dynamics studies
    Belhassan, Assia
    Salgado, Guillermo
    Mendoza-Huizar, Luis Humberto
    Zaki, Hanane
    Chtita, Samir
    Lakhlifi, Tahar
    Bouachrine, Mohammed
    Gerli Candia, Lorena
    Cardona, Wilson
    [J]. Journal of the Serbian Chemical Society, 2024, 89 (11) : 1447 - 1460
  • [2] Drugs Repurposing Using QSAR, Docking and Molecular Dynamics for Possible Inhibitors of the SARS-CoV-2 Mpro Protease
    Tejera, Eduardo
    Munteanu, Cristian R.
    Lopez-Cortes, Andres
    Cabrera-Andrade, Alejandro
    Perez-Castillo, Yunierkis
    [J]. MOLECULES, 2020, 25 (21):
  • [3] Molecular dynamics simulation of docking structures of SARS-CoV-2 main protease and HIV protease inhibitors
    Cardoso, Wesley B.
    Mendanha, Sebastiao A.
    [J]. JOURNAL OF MOLECULAR STRUCTURE, 2021, 1225
  • [4] Evaluation of flavonoids as potential inhibitors of the SARS-CoV-2 main protease and spike RBD: Molecular docking, ADMET evaluation and molecular dynamics simulations
    Hadni, Hanine
    Fitri, Asmae
    Benjelloun, Adil Touimi
    Benzakour, Mohammed
    Mcharfi, Mohammed
    [J]. JOURNAL OF THE INDIAN CHEMICAL SOCIETY, 2022, 99 (10)
  • [5] Molecular Docking and Dynamics Identify Potential Drugs to be Repurposed as SARS-CoV-2 Inhibitors
    Muzaffar-Ur-Rehman, Mohammed
    Suryakant, Chougule Kishore
    Chandu, Ala
    Kumar, Banoth Karan
    Joshi, Renuka Parshuram
    Jadav, Snehal Rajkumar
    Sankaranarayanan, Murugesan
    Vasan, Seshadri S.
    [J]. JOURNAL OF COMPUTATIONAL BIOPHYSICS AND CHEMISTRY, 2024, 23 (02): : 137 - 159
  • [6] Ligand-based design, molecular dynamics and ADMET studies of suggested SARS-CoV-2 Mpro inhibitors
    Mohamed, Nada M.
    Ali, Eslam M. H.
    AboulMagd, Asmaa M.
    [J]. RSC ADVANCES, 2021, 11 (08) : 4523 - 4538
  • [7] Molecular docking, molecular dynamics simulation, and ADMET analysis of levamisole derivatives against the SARS-CoV-2 main protease (MPro)
    El Khatabi, Khalil
    Aanouz, Ilham
    Alaqarbeh, Marwa
    Ajana, Mohammed Aziz
    Lakhifi, Tahar
    Bouachrine, Mohammed
    [J]. BIOIMPACTS, 2022, 12 (02) : 107 - 113
  • [8] Molecular Docking Unveils Prospective Inhibitors for the SARS-COV-2 Main Protease
    Ahmad, Fawad
    Ikram, Saima
    Ahmad, Jamshaid
    Rehman, Irshad Ur
    Khattak, Saeed Ullah
    Butt, Sadia
    Mushtaq, Maryam
    [J]. SAINS MALAYSIANA, 2021, 50 (05): : 1473 - 1484
  • [9] One-pot synthesis, molecular docking, ADMET, and DFT studies of novel pyrazolines as promising SARS-CoV-2 main protease inhibitors
    Salih, Rezan Huseen Hama
    Hasan, Aso Hameed
    Hussein, Awaz Jamil
    Samad, Mohammed Kareem
    Shakya, Sonam
    Jamalis, Joazaizulfazli
    Hawaiz, Farouq Emam
    Pratama, Mohammad Rizki Fadhil
    [J]. RESEARCH ON CHEMICAL INTERMEDIATES, 2022, 48 (11) : 4729 - 4751
  • [10] One-pot synthesis, molecular docking, ADMET, and DFT studies of novel pyrazolines as promising SARS-CoV-2 main protease inhibitors
    Rezan Huseen Hama Salih
    Aso Hameed Hasan
    Awaz Jamil Hussein
    Mohammed Kareem Samad
    Sonam Shakya
    Joazaizulfazli Jamalis
    Farouq Emam Hawaiz
    Mohammad Rizki Fadhil Pratama
    [J]. Research on Chemical Intermediates, 2022, 48 : 4729 - 4751