Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups

被引:34
|
作者
Meng, Hao-Tian [1 ,2 ]
Zhang, Yu-Dang [1 ,2 ]
Shen, Chun-Mei [3 ,4 ]
Yuan, Guo-Lian [5 ]
Yang, Chun-Hua [2 ,6 ]
Jin, Rui [2 ,7 ]
Yan, Jiang-Wei [8 ]
Wang, Hong-Dan [9 ]
Liu, Wen-Juan [2 ]
Jing, Hang [2 ]
Zhu, Bo-Feng [1 ]
机构
[1] Xi An Jiao Tong Univ, Stomatol Hosp, Res Ctr Stomatol, Xian 710004, Peoples R China
[2] Xi An Jiao Tong Univ, Hlth Sci Ctr, Xian 710061, Peoples R China
[3] Blood Ctr Shaanxi Prov, Xian 710061, Peoples R China
[4] Shaanxi Normal Univ, Col Life Sci, Xian 710062, Peoples R China
[5] Xi An Jiao Tong Univ, Sch Med, Affiliated Hosp 2, Sci Res & Expt Ctr, Xian 710004, Peoples R China
[6] Peoples Hosp Arong Banner, Hulun Buir City 162750, Peoples R China
[7] Xi An Jiao Tong Univ, Affiliated Hosp 2, Xian 710004, Peoples R China
[8] Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci, Beijing 100101, Peoples R China
[9] Peoples Hosp Henan Prov, Med Genet Inst Henan Prov, Zhengzhou 450003, Peoples R China
来源
SCIENTIFIC REPORTS | 2015年 / 5卷
基金
中国国家自然科学基金;
关键词
Y-CHROMOSOMAL STR; MUTATION-RATE; DNA; INSERTION; DELETION; NUCLEOTIDE; ASSAY; ANCESTRY; PANEL; LOCI;
D O I
10.1038/srep08260
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In the present study, we obtained population genetic data and forensic parameters of 30 InDel loci in Chinese Xibe ethnic group from northwestern China and studied the genetic relationships between the studied Xibe group and other reference groups. The observed heterozygosities ranged from 0.1704 at HLD118 locus to 0.5247 at HLD92 locus while the expected heterozygosities ranged from 0.1559 at HLD118 locus to 0.4997 at HLD101 locus. The cumulative power of exclusion and total probability of discrimination power in the studied group were 0.9867 and 0.9999999999902 for the 30 loci, respectively. Analyses of structure, PCA, interpopulation differentiations and phylogenetic tree revealed that the Xibe group had close genetic relationships with South Korean, Beijing Han and Guangdong Han groups. The results indicated that these 30 loci should only be used as a complement for autosomal STRs in paternity cases but could provide an acceptable level of discrimination in forensic identification cases in the studied Xibe group. Further studies should be conducted for better understanding of the Xibe genetic background.
引用
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页数:6
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