First-principles molecular dynamics simulations in a continuum solvent

被引:123
|
作者
Fattebert, JL [1 ]
Gygi, F [1 ]
机构
[1] Lawrence Livermore Natl Lab, Ctr Appl Sci Comp, Livermore, CA 94551 USA
关键词
Car-Parrinello molecular dynamics; density functional theory; continuum solvation model;
D O I
10.1002/qua.10548
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A new continuum solvation model for density functional theory first-principles simulations is presented in the context of plane wave Car-Parrinello molecular dynamics. The Poisson problem-with dielectric function representing the solvent effects-is solved by a compact finite difference method on a regular grid. The smoothness of the solute-solvent transition, and the density-based solute cavity, provide good numerical properties to the model and allow for total energy calculations, reaction barriers calculations, and energy-conserving molecular dynamics. (C) 2003 Wiley Periodicals, Inc.
引用
收藏
页码:139 / 147
页数:9
相关论文
共 50 条
  • [41] Phase transitions of liquid phosphorus: constant-pressure first-principles molecular dynamics simulations
    Morishita, T
    JOURNAL OF NON-CRYSTALLINE SOLIDS, 2002, 312-14 (312-314) : 22 - 25
  • [42] Structure of a uranyl peroxo complex in aqueous solution from first-principles molecular dynamics simulations
    Buehl, Michael
    Sieffert, Nicolas
    Wipff, Georges
    DALTON TRANSACTIONS, 2014, 43 (29) : 11129 - 11137
  • [43] First-principles molecular dynamics simulations of the H2O / Cu(111) interface
    Roger Nadler
    Javier Fernandez Sanz
    Journal of Molecular Modeling, 2012, 18 : 2433 - 2442
  • [44] First-Principles Molecular Dynamics Simulations of (sulfuric acid)1(dimethylamine)1 Cluster Formation
    Loukonen, Ville
    Bork, Nicolai
    Vehkamaki, Hanna
    NUCLEATION AND ATMOSPHERIC AEROSOLS, 2013, 1527 : 262 - 265
  • [45] First-principles molecular dynamics simulations on electrochemical reactions using effective screening medium method
    Otani, Minoru
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2014, 248
  • [46] An effect of nitrogen incorporation on the structure and properties of amorphous SiC: First-principles molecular dynamics simulations
    Ivashchenko, V. I.
    Turchi, P. E. A.
    Shevchenko, R. V.
    Gorb, Leonid
    Leszczynski, Jerzy
    Kozak, A. O.
    THIN SOLID FILMS, 2022, 756
  • [47] First-principles molecular dynamics simulations of the H2O/Cu(111) interface
    Nadler, Roger
    Fernandez Sanz, Javier
    JOURNAL OF MOLECULAR MODELING, 2012, 18 (06) : 2433 - 2442
  • [48] Operando Modeling of Zeolite-Catalyzed Reactions Using First-Principles Molecular Dynamics Simulations
    Van Speybroeck, Veronique
    Bocus, Massimo
    Cnudde, Pieter
    Vanduyfhuys, Louis
    ACS CATALYSIS, 2023, 13 (17) : 11455 - 11493
  • [49] FIRST-PRINCIPLES CALCULATIONS AND MOLECULAR DYNAMICS SIMULATIONS ON EFFECT OF HYDROGEN IMPURITY IN LEAD TITANATE FILMS
    Zhu, Lin
    You, Jeong Ho
    Chen, Jinghong
    PROCEEDINGS OF THE ASME INTERNATIONAL MECHANICAL ENGINEERING CONGRESS AND EXPOSITION, 2016, VOL. 9, 2017,
  • [50] Free energies of point defects in sodium from first-principles molecular-dynamics simulations
    Smargiassi, E.
    Madden, P. A.
    Physical Review D Particles, Fields, Gravitation and Cosmology, 1995, 51 (04):