IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios (87Sr/86Sr) obtained via laser-ablation MC-ICP-MS
被引:18
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作者:
Willmes, Malte
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机构:
Univ Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USAUniv Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USA
Willmes, Malte
[1
]
Ransom, Katherine M.
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机构:
Univ Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USA
Univ Calif Davis, Dept Land Air & Water Dept, Davis, CA USAUniv Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USA
Ransom, Katherine M.
[1
,2
]
Lewis, Levi S.
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Univ Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USAUniv Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USA
Lewis, Levi S.
[1
]
Denney, Christian T.
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Univ Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USAUniv Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USA
Denney, Christian T.
[1
]
Glessner, Justin J. G.
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机构:
Univ Calif Davis, Interdisciplinary Ctr Plasma Mass Spectrometry, Davis, CA USAUniv Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USA
Glessner, Justin J. G.
[3
]
Hobbs, James A.
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机构:
Univ Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USAUniv Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USA
Hobbs, James A.
[1
]
机构:
[1] Univ Calif Davis, Dept Wildlife Fish & Conservat Biol, Davis, CA 95616 USA
[2] Univ Calif Davis, Dept Land Air & Water Dept, Davis, CA USA
[3] Univ Calif Davis, Interdisciplinary Ctr Plasma Mass Spectrometry, Davis, CA USA
PLASMA-MASS SPECTROMETRY;
SR-ISOTOPE;
SPATIAL-RESOLUTION;
GEOLOGICAL-MATERIALS;
IOLITE FREEWARE;
R PACKAGE;
ELEMENTS;
D O I:
10.1371/journal.pone.0204519
中图分类号:
O [数理科学和化学];
P [天文学、地球科学];
Q [生物科学];
N [自然科学总论];
学科分类号:
07 ;
0710 ;
09 ;
摘要:
The IsoFishR application is a data reduction and analysis tool for laser-ablation strontium isotope data, following common best practices and providing reliable and reproducible results. Strontium isotope ratios (Sr-87/Sr-86) are a powerful geochemical tracer commonly applied in a wide range of scientific fields and laser-ablation inductively coupled mass spectrometry is considered the method of choice to obtain spatially resolved Sr-87/Sr-86 isotope ratios from a variety of sample materials. However, data reduction and analyses methods are variable between different research groups and research communities limiting reproducibility between studies. IsoFishR provides a platform to standardize these methods and can be used for both spot and time-resolved line transects. Furthermore, it provides advanced data analysis tools and filters for outlier removal, noise reduction, and visualization of time resolved data. The application can be downloaded from GitHub (https://github.com/MalteWillmes/IsoFishR) and the source code is available, encouraging future development and evolution of this software.
机构:
SUNY Stony Brook, Interdept Doctoral Program Anthropol Sci, Stony Brook, NY USASUNY Stony Brook, Interdept Doctoral Program Anthropol Sci, Stony Brook, NY USA
Iorga, Anastasia
Twiss, Katheryn C.
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SUNY Stony Brook, Interdept Doctoral Program Anthropol Sci, Stony Brook, NY USA
SUNY Stony Brook, Dept Anthropol, Stony Brook, NY USASUNY Stony Brook, Interdept Doctoral Program Anthropol Sci, Stony Brook, NY USA
Twiss, Katheryn C.
Goehring, Andrea
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机构:
Christian Albrecht Univ Kiel, Leibniz Lab Radiometr Dating & Stable Isotope Res, Kiel, GermanySUNY Stony Brook, Interdept Doctoral Program Anthropol Sci, Stony Brook, NY USA
Goehring, Andrea
Wright, Carrie C.
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机构:
SUNY Stony Brook, Dept Anthropol, Stony Brook, NY USA
SUNY Stony Brook, Dept Geosci, Facil Isotope Res & Student Training, Stony Brook, NY USASUNY Stony Brook, Interdept Doctoral Program Anthropol Sci, Stony Brook, NY USA
Wright, Carrie C.
Rasbury, E. Troy
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机构:
SUNY Stony Brook, Interdept Doctoral Program Anthropol Sci, Stony Brook, NY USA
SUNY Stony Brook, Dept Geosci, Facil Isotope Res & Student Training, Stony Brook, NY USASUNY Stony Brook, Interdept Doctoral Program Anthropol Sci, Stony Brook, NY USA
Rasbury, E. Troy
Wooton, Kathleen M.
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机构:
SUNY Stony Brook, Dept Geosci, Facil Isotope Res & Student Training, Stony Brook, NY USASUNY Stony Brook, Interdept Doctoral Program Anthropol Sci, Stony Brook, NY USA
机构:
Stockholm Univ, Dept Archaeol & Class Studies, Archaeol Res Lab, Lilla Frescativagen 7, Stockholm 11418, SwedenStockholm Univ, Dept Archaeol & Class Studies, Archaeol Res Lab, Lilla Frescativagen 7, Stockholm 11418, Sweden
Pokutta, Dalia A.
Borodovskiy, Andrey P.
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机构:
Russian Acad Sci, Siberian Branch, Inst Archaeol & Ethnog, Acad Lavrentiev Ave 17, Novosibirsk 630090, RussiaStockholm Univ, Dept Archaeol & Class Studies, Archaeol Res Lab, Lilla Frescativagen 7, Stockholm 11418, Sweden
Borodovskiy, Andrey P.
Oleszczak, Lukasz
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机构:
Jagiellonian Univ, Inst Archaeol, Golebia 11, Krakow 31007, PolandStockholm Univ, Dept Archaeol & Class Studies, Archaeol Res Lab, Lilla Frescativagen 7, Stockholm 11418, Sweden
Oleszczak, Lukasz
Toth, Peter
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机构:
Masaryk Univ, Fac Arts, Dept Archaeol & Museol, Arna Novaka 1-1, Brno 60200, Czech RepublicStockholm Univ, Dept Archaeol & Class Studies, Archaeol Res Lab, Lilla Frescativagen 7, Stockholm 11418, Sweden
Toth, Peter
Liden, Kerstin
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机构:
Stockholm Univ, Dept Archaeol & Class Studies, Archaeol Res Lab, Lilla Frescativagen 7, Stockholm 11418, SwedenStockholm Univ, Dept Archaeol & Class Studies, Archaeol Res Lab, Lilla Frescativagen 7, Stockholm 11418, Sweden
机构:
Univ Bristol, Sch Chem, Bristol BS8 1TS, Avon, EnglandCardiff Univ, Sch Hist Archaeol & Relig, John Percival Bldg,Colum Dr, Cardiff CF10 3EU, S Glam, Wales
Lewis, Jamie
Grimes, Vaughan
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机构:
Mem Univ Newfoundland, Dept Archaeol, 210 Prince Philip Dr, St John, NF A1C 5S7, CanadaCardiff Univ, Sch Hist Archaeol & Relig, John Percival Bldg,Colum Dr, Cardiff CF10 3EU, S Glam, Wales
Grimes, Vaughan
Guest, Peter
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机构:
Cardiff Univ, Sch Hist Archaeol & Relig, John Percival Bldg,Colum Dr, Cardiff CF10 3EU, S Glam, WalesCardiff Univ, Sch Hist Archaeol & Relig, John Percival Bldg,Colum Dr, Cardiff CF10 3EU, S Glam, Wales