Simulations of cellulose translocation in the bacterial cellulose synthase suggest a regulatory mechanism for the dimeric structure of cellulose

被引:17
|
作者
Knott, Brandon C. [1 ]
Crowley, Michael F. [2 ]
Himmel, Michael E. [2 ]
Zimmer, Jochen [3 ]
Beckham, Gregg T. [1 ]
机构
[1] Natl Renewable Energy Lab, Natl Bioenergy Ctr, 15013 Denver West Pkwy, Golden, CO 80401 USA
[2] Natl Renewable Energy Lab, Biosci Ctr, 15013 Denver West Pkwy, Golden, CO 80401 USA
[3] Univ Virginia, Dept Mol Physiol & Biol Phys, Ctr Membrane Biol, Charlottesville, VA 22980 USA
基金
美国国家卫生研究院;
关键词
GUI MEMBRANE-BUILDER; ACETOBACTER-XYLINUM; MOLECULAR-DYNAMICS; DI-GMP; BIOSYNTHESIS; CHARMM; PROTEIN; POLYMERIZATION; PROCESSIVITY; COMPLEXES;
D O I
10.1039/c5sc04558d
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The processive cycle of the bacterial cellulose synthase (Bcs) includes the addition of a single glucose moiety to the end of a growing cellulose chain followed by the translocation of the nascent chain across the plasma membrane. The mechanism of this translocation and its precise location within the processive cycle are not well understood. In particular, the molecular details of how a polymer (cellulose) whose basic structural unit is a dimer (cellobiose) can be constructed by adding one monomer (glucose) at a time are yet to be elucidated. Here, we have utilized molecular dynamics simulations and free energy calculations to the shed light on these questions. We find that translocation forward by one glucose unit is quite favorable energetically, giving a free energy stabilization of greater than 10 kcal mol(-1). In addition, there is only a small barrier to translocation, implying that translocation is not rate limiting within the Bcs processive cycle (given experimental rates for cellulose synthesis in vitro). Perhaps most significantly, our results also indicate that steric constraints at the transmembrane tunnel entrance regulate the dimeric structure of cellulose. Namely, when a glucose molecule is added to the cellulose chain in the same orientation as the acceptor glucose, the terminal glucose freely rotates upon forward motion, thus suggesting a regulatory mechanism for the dimeric structure of cellulose. We characterize both the conserved and non-conserved enzyme-polysaccharide interactions that drive translocation, and find that 20 of the 25 residues that strongly interact with the translocating cellulose chain in the simulations are well conserved, mostly with polar or aromatic side chains. Our results also allow for a dynamical analysis of the role of the so-called 'finger helix' in cellulose translocation that has been observed structurally. Taken together, these findings aid in the elucidation of the translocation steps of the Bcs processive cycle and may be widely relevant to polysaccharide synthesizing or degrading enzymes that couple catalysis with chain translocation.
引用
收藏
页码:3108 / 3116
页数:9
相关论文
共 50 条
  • [31] Synthesis and characterization of hydroxypropyl cellulose from bacterial cellulose
    Chun-tao Chen
    Yang Huang
    Chun-lin Zhu
    Ying Nie
    Jia-zhi Yang
    Dong-ping Sun
    Chinese Journal of Polymer Science, 2014, 32 : 439 - 448
  • [32] Bacterial cellulose and bacterial cellulose-vaccarin membranes for wound healing
    Qiu, Yuyu
    Qiu, Liying
    Cui, Jing
    Wei, Qufu
    MATERIALS SCIENCE & ENGINEERING C-MATERIALS FOR BIOLOGICAL APPLICATIONS, 2016, 59 : 303 - 309
  • [33] Cellulose in cyanobacteria. Origin of vascular plant cellulose synthase?
    Nobles, DR
    Romanovicz, DK
    Brown, RM
    PLANT PHYSIOLOGY, 2001, 127 (02) : 529 - 542
  • [34] Cellulose synthase interacting protein A new factor in cellulose synthesis
    Gu, Ying
    Somerville, Chris
    PLANT SIGNALING & BEHAVIOR, 2010, 5 (12) : 1571 - 1574
  • [35] High Performance Cellulose Nanocomposites: Comparing the Reinforcing Ability of Bacterial Cellulose and Nanofibrillated Cellulose
    Lee, Koon-Yang
    Tammelin, Tekla
    Schulfter, Kerstin
    Kiiskinen, Harri
    Samela, Juha
    Bismarck, Alexander
    ACS APPLIED MATERIALS & INTERFACES, 2012, 4 (08) : 4078 - 4086
  • [36] Structure and properties of polypyrrole/bacterial cellulose nanocomposites
    Muller, Daliana
    Rambo, Carlos R.
    Porto, Luismar. M.
    Schreiner, Wido H.
    Barra, Guilherme M. O.
    CARBOHYDRATE POLYMERS, 2013, 94 (01) : 655 - 662
  • [37] FIBRILLAR STRUCTURE OF CELLULOSE OF BACTERIAL AND ANIMAL ORIGIN
    ASCHNER, M
    HESTRIN, S
    NATURE, 1946, 157 (3994) : 659 - 659
  • [38] BIOGENESIS OF BACTERIAL CELLULOSE
    CANNON, RE
    ANDERSON, SM
    CRITICAL REVIEWS IN MICROBIOLOGY, 1991, 17 (06) : 435 - 447
  • [39] Modification of bacterial cellulose
    Ciechańska, Danuta
    Struszczyk, Henryk
    Guzińska, Krystyna
    Fibres and Textiles in Eastern Europe, 6 (04): : 61 - 65
  • [40] Synthesis and Membrane Translocation of Cellulose
    Zimmer, Jochen
    GLYCOBIOLOGY, 2013, 23 (11) : 1333 - 1333