Current trends in mathematical modeling of tumor-microenvironment interactions: a survey of tools and applications

被引:50
|
作者
Rejniak, Katarzyna A. [1 ]
McCawley, Lisa J. [2 ]
机构
[1] Univ S Florida, Coll Med, H Lee Moffitt Canc Ctr & Res Inst, Tampa, FL 33612 USA
[2] Vanderbilt Univ, Dept Canc Biol, Med Ctr, Nashville, TN 37232 USA
基金
美国国家卫生研究院;
关键词
tumor; tumor microenvironment; mathematical modeling; tumor-microenvironnnent interactions; computational modeling; tumor-stroma interactions; CELL-BASED MODEL; INTERSTITIAL FLOW; COLORECTAL-CANCER; DRUG-DELIVERY; GROWTH; INVASION; METABOLISM; SIMULATION; EVOLUTION; DIFFUSION;
D O I
10.1258/ebm.2009.009230
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
In its simplest description, a tumor is comprised of an expanding population of transformed cells supported by a surrounding microenvironment termed the tumor stroma. The tumor microcroenvironment has a very complex composition, including multiple types of stromal cells, a dense network of various extracellular matrix (ECM) fibers interpenetrated by the interstitial fluid and gradients of several chemical species that either are dissolved in the fluid or are bound to the ECM structure. In order to study experimentally such complex interactions between multiple players, cancer is dissected and considered at different scales of complexity, such as protein interactions, biochemical pathways, cellular functions or whole organism studies. However, the integration of information acquired from these studies into a common description is as difficult as the disease itself. Computational models of cancer can provide cancer researchers with invaluable tools that are capable of integrating the complexity into organizing principles as well as suggesting testable hypotheses. We will focus in this Minireview on mathematical models in which the whole cell is a main modeling unit. We will present a current stage of such cell-focused mathematical modeling incorporating different stromal components and their interactions with growing tumors, and discuss what modeling approaches can be undertaken to complement the in vivo and in vitro experimentation.
引用
收藏
页码:411 / 423
页数:13
相关论文
共 50 条
  • [31] Patient-derived mini-colons enable long-term modeling of tumor-microenvironment complexity
    Lorenzo-Martin, L. Francisco
    Broguiere, Nicolas
    Langer, Jakob
    Tillard, Lucie
    Nikolaev, Mikhail
    Coukos, George
    Homicsko, Krisztian
    Lutolf, Matthias P.
    NATURE BIOTECHNOLOGY, 2024,
  • [32] Role of senescent tumor cells in building a cytokine shield in the tumor microenvironment: mathematical modeling
    Yangjin Kim
    Junho Lee
    Chaeyoung Lee
    Sean Lawler
    Journal of Mathematical Biology, 2023, 86
  • [33] Role of senescent tumor cells in building a cytokine shield in the tumor microenvironment: mathematical modeling
    Kim, Yangjin
    Lee, Junho
    Lee, Chaeyoung
    Lawler, Sean
    JOURNAL OF MATHEMATICAL BIOLOGY, 2023, 86 (01)
  • [34] Mathematical modeling of tumor-immune cell interactions
    Mahlbacher, Grace E.
    Reihmer, Kara C.
    Frieboes, Hermann B.
    JOURNAL OF THEORETICAL BIOLOGY, 2019, 469 : 47 - 60
  • [35] Mathematical modeling of the tumor-immune microenvironment in murine colon adenocarcinoma
    Rentzeperis, Frederika
    Srinivasan, Maya
    Wallace, Dorothy
    CANCER RESEARCH, 2022, 82 (10)
  • [36] Mapping and modeling human colorectal carcinoma interactions with the tumor microenvironment
    Li, Ning
    Zhu, Qin
    Tian, Yuhua
    Ahn, Kyung Jin
    Wang, Xin
    Cramer, Zvi
    Jou, Justine
    Folkert, Ian W.
    Yu, Pengfei
    Adams-Tzivelekidis, Stephanie
    Sehgal, Priyanka
    Mahmoud, Najia N.
    Aarons, Cary B.
    Roses, Robert E.
    Thomas-Tikhonenko, Andrei
    Furth, Emma E.
    Stanger, Ben Z.
    Rustgi, Anil
    Haldar, Malay
    Katona, Bryson W.
    Tan, Kai
    Lengner, Christopher J.
    NATURE COMMUNICATIONS, 2023, 14 (01)
  • [37] In vivo CRISPR screens identified dual function of MEN1-MLL1 in regulating tumor-microenvironment interactions
    Su, Peiran
    Liu, Yin
    Tsao, Ming-Sound
    He, Housheng H.
    CANCER RESEARCH, 2022, 82 (12)
  • [38] Novel algorithms for spatial modeling of cellular interactions in the tumor microenvironment
    Yan, Yiyi
    Santamaria-Pang, Alberto
    Gerdes, Michael
    Ginty, Fiona
    Sood, Anup
    Markovic, Svetomir N.
    Leontovich, Alexey
    CANCER RESEARCH, 2017, 77
  • [39] Mapping and modeling human colorectal carcinoma interactions with the tumor microenvironment
    Ning Li
    Qin Zhu
    Yuhua Tian
    Kyung Jin Ahn
    Xin Wang
    Zvi Cramer
    Justine Jou
    Ian W. Folkert
    Pengfei Yu
    Stephanie Adams-Tzivelekidis
    Priyanka Sehgal
    Najia N. Mahmoud
    Cary B. Aarons
    Robert E. Roses
    Andrei Thomas-Tikhonenko
    Emma E. Furth
    Ben Z. Stanger
    Anil Rustgi
    Malay Haldar
    Bryson W. Katona
    Kai Tan
    Christopher J. Lengner
    Nature Communications, 14
  • [40] A multilayered epithelial mucosa model of head neck squamous cell carcinoma for analysis of tumor-microenvironment interactions and drug development
    Gronbach, Leonie
    Wolff, Christopher
    Klinghammer, Konrad
    Stellmacher, Johannes
    Jurmeister, Philipp
    Alexiev, Ulrike
    Schafer-Korting, Monika
    Tinhofer, Ingeborg
    Keilholz, Ulrich
    Zoschke, Christian
    BIOMATERIALS, 2020, 258