Phylogenetic relationships and characterization of the complete chloroplast genome of Rosa sterilis

被引:4
|
作者
Yan, Huiqing [1 ]
Liu, Yanjing [2 ,3 ]
Wu, Zongmin [2 ,3 ]
Yi, Yin [2 ,3 ]
Huang, Xiaolong [2 ,3 ]
机构
[1] Guizhou Normal Univ, Sch Life Sci, Guiyang, Peoples R China
[2] Guizhou Normal Univ, Key Lab State Forestry Adm Biodivers Conservat Mo, Guiyang, Peoples R China
[3] Guizhou Normal Univ, Key Lab Plant Physiol & Dev Regulat, Guiyang, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 04期
基金
中国国家自然科学基金;
关键词
Rosa sterilis; Rosaceae; chloroplast genome; phylogenetic relationship;
D O I
10.1080/23802359.2021.1915200
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Rosa sterilis is an economically and important fruit that is extensively grown in Southwestern China. In this study, we determined the complete chloroplast genome of R. sterilis using high-throughput Illumina sequencing. The chloroplast genome of R. sterilis is 156,561 bp in size, containing a large single-copy region (LSC)(85,701 bp), a small single-copy region (SSC) (18,746 bp), and a pair of inverted repeat (IR) regions (each one of 26,057 bp). The overall GC content of the chloroplast genome is 37.23%, while the corresponding values of GC contents of the LSC, SSC, and IR regions are 35.20%, 31.37%, and 42.70%, respectively. The chloroplast genome of R. sterilis contains 130 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic maximum-likelihood tree revealed that Rosa chinensis or Rosa chinensis var. spontanea is the closest related to R. sterilis in the phylogenetic relationship. This complete chloroplast genome can be further used for genomic studies, evolutionary analyses, and genetic engineering studies of the family Rosaceae.
引用
收藏
页码:1544 / 1546
页数:3
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