Data of 'Circulating tumor DNA correlates with tumor burden and predicts outcome in pancreatic cancer irrespective of tumor stage'

被引:0
|
作者
Kirchweger, Patrick [1 ,2 ,3 ]
Kupferthaler, Alexander [4 ]
Burghofer, Jonathan [5 ]
Webersinke, Gerald [5 ]
Jukic, Emina [6 ]
Schwendinger, Simon [6 ]
Weitzendorfer, Michael [7 ]
Petzer, Andreas [3 ,8 ]
Fuegger, Reinhold [2 ,3 ]
Rumpold, Holger [1 ,3 ]
Wundsam, Helwig [2 ]
机构
[1] Ordensklinikum Linz, Gastrointestinal Canc Ctr, Linz, Austria
[2] Ordensklinikum Linz, Dept Surg, Seilerstaette 4, A-4010 Linz, Austria
[3] Johannes Kepler Univ Linz, Med Fac, Linz, Austria
[4] Ordensklinikum Linz, Dept Diagnost & Intervent Radiol, Linz, Austria
[5] Ordensklinikum Linz, Lab Mol Genet Disorders, Linz, Austria
[6] Med Univ Innsbruck, Inst Human Genet, Innsbruck, Austria
[7] Paracelsus Med Univ Salzburg, Dept Surg, Salzburg, Austria
[8] Ordensklinikum Linz, Dept Internal Med Hematol Stem Cell Transplantat, Hemostaseol & Med Oncol, Linz, Austria
来源
DATA IN BRIEF | 2022年 / 41卷
关键词
Circulating tumor DNA; Pancreatic cancer; Liquid biopsy; Tumor volume; Survival analysis;
D O I
10.1016/j.dib.2022.107944
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
This data article subsumes the data acquiration process, analysis and results of 'Circulating tumor DNA correlates with tumor burden and predicts outcome in pancreatic cancer irrespective of tumor stage' published in European Journal of Surgical Oncology (Eur J Surg Oncol. 2021 Dec 1:S0748-7983(21)00947-1. doi: 10.1016/j.ejso.2021.11.138 . PMID: 34876329) (Kirchweger et al., 2021). 28.5 mL of blood was obtained from 60 patients with localized pancreatic cancer directly prior to curative intended surgery as well as from 47 patients with metastasized pancreatic cancer (PDAC) directly prior to palliative intended systemic treatment initiation. Cell-free DNA preparation was done on the Chemagic 360 (Perkin Elmer, Waltham, Massachusetts, USA) using the kits CMG-1304 and CMG-844 from the same provider and quantified using the Quantus fluorometer (Promega, Madison, Wisconsin, USA). Screening for most common KRAS alterations (KRAS G12/G13 screening kit and additionally for KRAS Q61 if screening was negative) was performed utilizing the QX200TM Droplet DigitalTM PCR System from Bio-Rad (Bio-Rad Laboratories, Hercules, CA, USA). Volumetric analysis was performed on contrast enhanced dual-energy CT scans in the arterial and portal venous phase prior to treatment initiation using Syngo.via (Siemens Healthcare, Forchheim, Germany) on MM Oncology Workflow adhering to RECIST 1.1 criteria (Eisenhauer et al., 2009). CtDNA predicts outcome in localized and disseminated disease. Moreover, it correlates with distant metastasis volume and positive lymph nodes but not primary tumor volume and therefore could indicate subclinical synchronous distant metastases in localized PDAC undetectable by current gold standard (computed tomography). (c) 2022 The Authors. Published by Elsevier Inc.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] Clinical utility of circulating tumor DNA for molecular assessment in pancreatic cancer
    Erina Takai
    Yasushi Totoki
    Hiromi Nakamura
    Chigusa Morizane
    Satoshi Nara
    Natsuko Hama
    Masami Suzuki
    Eisaku Furukawa
    Mamoru Kato
    Hideyuki Hayashi
    Takashi Kohno
    Hideki Ueno
    Kazuaki Shimada
    Takuji Okusaka
    Hitoshi Nakagama
    Tatsuhiro Shibata
    Shinichi Yachida
    Scientific Reports, 5
  • [42] Clinical utility of circulating tumor DNA for molecular assessment in pancreatic cancer
    Takai, Erina
    Totoki, Yasushi
    Nakamura, Hiromi
    Morizane, Chigusa
    Nara, Satoshi
    Hama, Natsuko
    Suzuki, Masami
    Furukawa, Eisaku
    Kato, Mamoru
    Hayashi, Hideyuki
    Kohno, Takashi
    Ueno, Hideki
    Shimada, Kazuaki
    Okusaka, Takuji
    Nakagama, Hitoshi
    Shibata, Tatsuhiro
    Yachida, Shinichi
    SCIENTIFIC REPORTS, 2015, 5
  • [43] Evaluation of circulating tumor DNA as a biomarker in pancreatic cancer with liver metastasis
    Uesato, Yasunori
    Sasahira, Naoki
    Ozaka, Masato
    Sasaki, Takashi
    Takatsuki, Mitsuhisa
    Zembutsu, Hitoshi
    PLOS ONE, 2020, 15 (07):
  • [44] Circulating tumor DNA as a cancer biomarker
    Diehl, F.
    Schmidt, K.
    Choti, M. A.
    Goodman, S.
    Romans, K.
    Thornton, K.
    Kinzler, K.
    Vogelstein, B.
    Diaz, L. A.
    JOURNAL OF CLINICAL ONCOLOGY, 2008, 26 (15)
  • [45] Targeted deep sequencing of circulating tumor DNA in metastatic pancreatic cancer
    Berger, Andreas W.
    Schwerdel, Daniel
    Ettrich, Thomas J.
    Hann, Alexander
    Schmidt, Stefan A.
    Kleger, Alexander
    Marienfeld, Ralf
    Seufferlein, Thomas
    ONCOTARGET, 2018, 9 (02) : 2076 - 2085
  • [46] Personalized Circulating Tumor DNA and Survival in Patients with Resectable Pancreatic Cancer
    Eckhoff, Austin
    Kanu, Elishama
    Fletcher, Ashley
    Bao, Matthew
    Nussbaum, Daniel P.
    Blazer, Dan G., III
    Lidsky, Michael E.
    Zani, Sabino
    Shah, Kevin
    Aushev, Vasily
    Krinshpun, Shifra
    Jurdi, Adham
    Liu, Minetta
    Allen, Peter J.
    Herbert, Garth
    ANNALS OF SURGICAL ONCOLOGY, 2023, 30 (SUPPL 1) : S76 - S76
  • [47] A Review of Circulating Tumor DNA (ctDNA) in Pancreatic Cancer: Ready for the Clinic?
    Jonnalagadda, Purvi
    Arnold, Virginia
    Weinberg, Benjamin A.
    JOURNAL OF GASTROINTESTINAL CANCER, 2025, 56 (01)
  • [48] Circulating tumor DNA as a liquid biopsy target for detection of pancreatic cancer
    Takai, Erina
    Yachida, Shinichi
    WORLD JOURNAL OF GASTROENTEROLOGY, 2016, 22 (38) : 8480 - 8488
  • [49] Current Status of Circulating Tumor DNA Liquid Biopsy in Pancreatic Cancer
    Grunvald, Miles W.
    Jacobson, Richard A.
    Kuzel, Timothy M.
    Pappas, Sam G.
    Masood, Ashiq
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 21 (20) : 1 - 15
  • [50] Landscape of circulating tumor DNA profiling of advanced pancreatic cancer (PDAC).
    Mody, Kabir
    Kasi, Pashtoon Murtaza
    Surapaneni, Phani Keerthi
    Borad, Mitesh J.
    Ahn, Daniel H.
    Mahipal, Amit
    Starr, Jason Scott
    Ritter, Ashton
    McMillan, Jessica
    Wylie, Natasha
    Roberts, Ali
    Nagy, Rebecca J.
    Bekaii-Saab, Tanios S.
    JOURNAL OF CLINICAL ONCOLOGY, 2019, 37 (04)