Microsecond Dynamics in Ubiquitin Probed by Solid-State 15N NMR Spectroscopy R1ρ Relaxation Experiments under Fast MAS (60-110 kHz)

被引:35
|
作者
Lakomek, Nils-Alexander [1 ]
Penzel, Susanne [1 ]
Lends, Alons [1 ]
Cadalbert, Riccardo [1 ]
Ernst, Matthias [1 ]
Meier, Beat H. [1 ]
机构
[1] Swiss Fed Inst Technol, Lab Phys Chem, Vladimir Prelog Weg 2, CH-8093 Zurich, Switzerland
基金
瑞士国家科学基金会;
关键词
biophysics; molecular dynamics; NMR spectroscopy; proteins; solid-state structures; RESIDUAL DIPOLAR COUPLINGS; PROTEIN BACKBONE DYNAMICS; LIQUID-CRYSTALLINE PHASE; MODEL-FREE ANALYSIS; SLOW MOTIONS; CONFORMATIONAL FLEXIBILITY; COLLECTIVE MOTION; CROSS-VALIDATION; ORDER PARAMETERS; SPIN RELAXATION;
D O I
10.1002/chem.201701738
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
N-15 R-1 rho relaxation experiments in solid-state NMR spectroscopy are sensitive to timescales and amplitudes of internal protein motions in the hundreds of nano-to microsecond time window, which is difficult to probe by solution-state NMR spectroscopy. By using N-15 R-1 rho relaxation experiments, a simplified approach to detect low microsecond protein dynamics is described and residue-specific correlation times are determined from the ratio of N-15 R-1 rho rate constants at different magic angle spinning frequencies. Micro-crystalline ubiquitin exhibits small-amplitude dynamics on a timescale of about 1 mu s across the entire protein, and larger amplitude motions, also on the 1 mu s timescale, for several sites, including the beta(1)-beta(2) turn and the N terminus of the a helix. According to the analysis, the microsecond protein backbone dynamics are of lower amplitude than that concluded in previous solid-state NMR spectroscopy studies, but persist across the entire protein with a rather uniform timescale of 1 mu s.
引用
收藏
页码:9425 / 9433
页数:9
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