N-15 R-1 rho relaxation experiments in solid-state NMR spectroscopy are sensitive to timescales and amplitudes of internal protein motions in the hundreds of nano-to microsecond time window, which is difficult to probe by solution-state NMR spectroscopy. By using N-15 R-1 rho relaxation experiments, a simplified approach to detect low microsecond protein dynamics is described and residue-specific correlation times are determined from the ratio of N-15 R-1 rho rate constants at different magic angle spinning frequencies. Micro-crystalline ubiquitin exhibits small-amplitude dynamics on a timescale of about 1 mu s across the entire protein, and larger amplitude motions, also on the 1 mu s timescale, for several sites, including the beta(1)-beta(2) turn and the N terminus of the a helix. According to the analysis, the microsecond protein backbone dynamics are of lower amplitude than that concluded in previous solid-state NMR spectroscopy studies, but persist across the entire protein with a rather uniform timescale of 1 mu s.
机构:
Univ Michigan, Biophys, Ann Arbor, MI 48109 USA
Univ Michigan, Dept Chem, Ann Arbor, MI 48109 USARIKEN CLST JEOL Collaborat Ctr, Yokohama, Kanagawa 2300045, Japan
Zhang, Rongchun
Ramamoorthy, Ayyalusamy
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Univ Michigan, Biophys, Ann Arbor, MI 48109 USA
Univ Michigan, Dept Chem, Ann Arbor, MI 48109 USARIKEN CLST JEOL Collaborat Ctr, Yokohama, Kanagawa 2300045, Japan
Ramamoorthy, Ayyalusamy
Nishiyama, Yusuke
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RIKEN CLST JEOL Collaborat Ctr, Yokohama, Kanagawa 2300045, Japan
JEOL RESONANCE Inc, Akishima, Tokyo 1968558, JapanRIKEN CLST JEOL Collaborat Ctr, Yokohama, Kanagawa 2300045, Japan