Origin of the Non-Arrhenius Behavior of the Rates of Enzymatic Reactions

被引:13
|
作者
Roy, Subhendu [1 ]
Schopf, Patrick [2 ]
Warshel, Arieh [1 ]
机构
[1] Univ Southern Calif, Dept Chem, 3620 McClintock Ave, Los Angeles, CA 90089 USA
[2] Astex Pharmaceut, Cambridge CB4 0QA, England
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2017年 / 121卷 / 27期
关键词
BACILLUS-STEAROTHERMOPHILUS; ENTROPIC CONTRIBUTIONS; ALCOHOL-DEHYDROGENASE; ELECTRON-TRANSFER; PROTEIN DYNAMICS; POLAR-SOLVENTS; SIMULATION; CATALYSIS; MOTIONS;
D O I
10.1021/acs.jpcb.7b03698
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The origin of the non-Arrhenius behavior of the rate constant for hydride transfer enzymatic reactions has been a puzzling problem since its initial observation. This effect has been used originally to support the idea that enzymes work by dynamical effects and more recently to suggest an entropy funnel model. Our analysis, however, has advanced the idea that the reason for the non-Arrhenius trend reflects the temperature dependence of the rearrangements of the protein polar groups in response to the change in the charge distribution of the reacting system during the transition from the ground state (GS) to the transition state (TS). Here we examine the validity of our early proposal by simulating the catalytic reaction of alcohol dehydrogenase (ADH) and determine the microscopic origin of the entropic and enthalpic contributions to the activation barrier. The corresponding analysis establishes the origin of the non-Arrhenius behaviors and quantifies our original suggestion that the classical effect is due to the entropic contributions of the environment. We also find that the quantum effects reflect in part the temperature dependence of the donor acceptor distance.
引用
收藏
页码:6520 / 6526
页数:7
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