TiSGeD: a database for tissue-specific genes

被引:115
|
作者
Xiao, Sheng-Jian [1 ]
Zhang, Chi [1 ]
Zou, Quan [1 ]
Ji, Zhi-Liang [1 ,2 ]
机构
[1] Xiamen Univ, Key Lab Cell Biol & Tumor Cell Engn, Sch Life Sci, Minist Educ China, Xiamen 361005, Fujian, Peoples R China
[2] Xiamen Univ, Key Lab Chem Biol Fujian Prov, Sch Chem & Chem Engn, Xiamen 361005, Fujian, Peoples R China
基金
中国国家自然科学基金;
关键词
EXPRESSION DATA;
D O I
10.1093/bioinformatics/btq109
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these genes helps better understanding of tissue-gene relationship, etiology and discovery of novel tissue-specific drug targets. In this study, a statistical method is introduced to detect tissue-specific genes from more than 123 125 gene expression profiles over 107 human tissues, 67 mouse tissues and 30 rat tissues. As a result, a novel subject-specialized repository, namely the tissue-specific genes database (TiSGeD), is developed to represent the analyzed results. Auxiliary information of tissue-specific genes was also collected from biomedical literatures.
引用
收藏
页码:1273 / 1275
页数:3
相关论文
共 50 条
  • [1] TiProD: the Tissue-specific Promoter Database
    Chen, Xin
    Wu, Jian-min
    Hornischer, Klaus
    Kel, Alexander
    Wingender, Edgar
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : D104 - D107
  • [2] TISSUE-SPECIFIC GENES FOR RESPIRATORY PROTEINS
    LOMAX, MI
    GROSSMAN, LI
    [J]. TRENDS IN BIOCHEMICAL SCIENCES, 1989, 14 (12) : 501 - 503
  • [3] TissGDB: tissue-specific gene database in cancer
    Kim, Pora
    Park, Aekyung
    Han, Guangchun
    Sun, Hua
    Jia, Peilin
    Zhao, Zhongming
    [J]. NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) : D1031 - D1038
  • [4] The Brassica rapa Tissue-specific EST Database
    Yu, Hee-Ju
    Park, Sin-Gi
    Oh, Mijin
    Hwang, Hyun-Ju
    Kim, Namshin
    Chung, Hee
    Sohn, Seong-Han
    Park, Beom-Seok
    Mun, Jeong-Hwan
    [J]. KOREAN JOURNAL OF HORTICULTURAL SCIENCE & TECHNOLOGY, 2011, 29 (06) : 633 - 640
  • [5] TISSUE-SPECIFIC REGULATORS OF MAIZE ANTHOCYANIN GENES
    CHANDLER, VL
    GOFF, SA
    TOLAR, LA
    SAINZ, MB
    LESNICK, M
    [J]. MOLECULAR BIOLOGY OF THE CELL, 1992, 3 : A98 - A98
  • [6] TISSUE-SPECIFIC EXPRESSION OF IMMUNOGLOBULIN GENES - A REAPPRAISAL
    GOUGH, N
    [J]. TRENDS IN GENETICS, 1985, 1 (10) : 267 - 268
  • [7] A NOVEL METHOD FOR THE ISOLATION OF TISSUE-SPECIFIC GENES
    RODRIGUEZ, IR
    CHADER, GJ
    [J]. NUCLEIC ACIDS RESEARCH, 1992, 20 (13) : 3528 - 3528
  • [8] A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine
    Ruben, Marc D.
    Wu, Gang
    Smith, David F.
    Schmidt, Robert E.
    Francey, Lauren J.
    Lee, Yin Yeng
    Anafi, Ron C.
    Hogenesch, John B.
    [J]. SCIENCE TRANSLATIONAL MEDICINE, 2018, 10 (458)
  • [9] DIAGNOSIS OF MICROMETASTASES BY THE AMPLIFICATION OF TISSUE-SPECIFIC GENES
    NEUMAIER, M
    GERHARD, M
    WAGENER, C
    [J]. GENE, 1995, 159 (01) : 43 - 47
  • [10] Tissue-specific Regulation of mtDNA Encoded Genes
    Giannoulis, Xenofon
    Cai, Na
    [J]. GENETIC EPIDEMIOLOGY, 2021, 45 (07) : 756 - 756