Prokaryotic phylogeny based on complete genomes without sequence alignment

被引：24
|
作者：
Hao, BL [1 ]
Qi, J
Wang, B
机构：
[1] Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China
[2] CAS, Inst Theoret Phys, Beijing 100080, Peoples R China
来源：
MODERN PHYSICS LETTERS B | 2003年 / 17卷 / 03期
关键词：
phylogeny; prokaryote; compositional distance; random background; Markov assumption;
D O I：
10.1142/S0217984903004968
中图分类号：
O59 [应用物理学];
学科分类号：
摘要：
We present a brief review of a series of on-going work on bacterial phylogeny. We propose a new method to infer relatedness of prokaryotes from their complete genome data without using sequence alignment, leading to results comparable with the bacteriologists' systematics as reflected in the latest 2001 edition of Bergey's Manual of Systematic Bacteriology.(1) We only touch on the mathematical aspects of the method. The biological implications of our results will be published elsewhere.
引用
收藏
页码：91 / 94
页数：4
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