A mutual information based sequence distance for vertebrate phylogeny using complete mitochondrial genomes

被引：0
|
作者：
Yu, Z. G. [1 ,2 ]
Mao, Z. [1 ]
Zhou, L. Q. [1 ]
Anh, V. V. [2 ]
机构：
[1] Xiangtan Univ, Sch Math & Computat Sci, Xiangtan 411105, Peoples R China
[2] Queensland Univ Technol, Sch Math Sci, Brisbane, Qld Q 4001, Australia
来源：
ICNC 2007: THIRD INTERNATIONAL CONFERENCE ON NATURAL COMPUTATION, VOL 2, PROCEEDINGS | 2007年
基金：
澳大利亚研究理事会;
关键词：
D O I：
暂无
中图分类号：
TP18 [人工智能理论];
学科分类号：
081104 ; 0812 ; 0835 ; 1405 ;
摘要：
Traditional sequence distances require alignment. A new mutual information based sequence distance without alignment is defined in this paper This distance is based on compositional vectors of DNA sequences or protein sequences from complete genomes. First we establish the mathematical-foundation of this distance. Then this distance is applied to analyze the phylogenetic relationship of 64 vertebrates using complete mitochondrial genomes. The phylogenetic tree shows that the mitochondrial genomes are separated into three major groups. One group corresponds to mammals; one group corresponds to fish; and the last one is Archosauria (including birds and reptiles). The structure of the tree based on our new distance is roughly in agreement in topology with the current known phylogenies of vertebrates.
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页码：253 / +
页数：3
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