Inferring genetic networks from microarray data

被引：0

作者：

Martin, S ^{[1
]}

Davidson, G ^{[1
]}

May, E ^{[1
]}

Faulon, JL ^{[1
]}

Werner-Washburne, M ^{[1
]}

机构：

[1] Sandia Natl Labs, Albuquerque, NM 87110 USA

来源：

2004 IEEE COMPUTATIONAL SYSTEMS BIOINFORMATICS CONFERENCE, PROCEEDINGS | 2004年

关键词：

D O I：

暂无

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

In theory, it should be possible to infer realistic genetic networks from time series microarray data. In practice, however, network discovery has proved problematic. The three major challenges are 1) inferring the network, 2) estimating the stability of the inferred network, and 3) making the network visually accessible to the user Here we describe a method, tested on publicly available time series microarray data, which addresses these concerns.

引用

页码：566 / 569

页数：4

共 50 条

[31] Inferring transcriptional modules from ChIP-chip, motif and microarray data
Karen Lemmens
Thomas Dhollander
Tijl De Bie
Pieter Monsieurs
Kristof Engelen
Bart Smets
Joris Winderickx
Bart De Moor
Kathleen Marchal
[J]. Genome Biology, 7
[32] Bayesian inference of genetic regulatory networks from time series microarray data using dynamic Bayesian networks
Huang, Yufei
Wang, Jianyin
Zhang, Jianqiu
Sanchez, Maribel
Wang, Yufeng
[J]. Journal of Multimedia, 2007, 2 (03): : 46 - 56
[33] Recovering Genetic Regulatory Networks from Chromatin Immunoprecipitation and Steady-State Microarray Data
Zhao, Wentao
Serpedin, Erchin
Dougherty, Edward R.
[J]. EURASIP JOURNAL ON BIOINFORMATICS AND SYSTEMS BIOLOGY, 2008, (01):
[34] Inferring genetic networks with sparse structure
Chen, LN
Nakai, J
Seo, M
[J]. IEEE EMBS APBME 2003, 2003, : 80 - 81
[35] Interpreting microarray data to build models of microbial genetic regulation networks
Sokhansanj, BA
Garnham, JB
Fitch, JP
[J]. FUNCTIONAL MONITORING AND DRUG-TISSUE INTERACTION, 2002, 4623 : 27 - 37
[36] Interpreting microarray data to build models of microbial genetic regulation networks
Lawrence Livermore Natl. Laboratory, 7000 East Ave., Livermore, CA 94550, United States
[J]. Proc SPIE Int Soc Opt Eng, 1600, (27-37):
[37] GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data
Wu, CC
Huang, HC
Juan, HF
Chen, ST
[J]. BIOINFORMATICS, 2004, 20 (18) : 3691 - 3693
[38] SNVstory: inferring genetic ancestry from genome sequencing data
Audrey E. Bollas
Andrei Rajkovic
Defne Ceyhan
Jeffrey B. Gaither
Elaine R. Mardis
Peter White
[J]. BMC Bioinformatics, 25
[39] SNVstory: inferring genetic ancestry from genome sequencing data
Bollas, Audrey E.
Rajkovic, Andrei
Ceyhan, Defne
Gaither, Jeffrey B.
Mardis, Elaine R.
White, Peter
[J]. BMC BIOINFORMATICS, 2024, 25 (01)
[40] Inferring Epistasis from Genetic Time-series Data
Sohail, Muhammad Saqib
Louie, Raymond H. Y.
Hong, Zhenchen
Barton, John P.
McKay, Matthew R.
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2022, 39 (10)

← 1 2 3 4 5 →