Motif-based spectral clustering of weighted directed networks

被引:9
|
作者
Underwood, William G. [1 ,2 ]
Elliott, Andrew [3 ,4 ]
Cucuringu, Mihai [1 ,3 ]
机构
[1] Univ Oxford, Dept Stat, 24-29 St Giles, Oxford OX1 3LB, England
[2] Princeton Univ, Dept Operat Res & Financial Engn, Sherrerd Hall,Charlton St, Princeton, NJ 08544 USA
[3] British Lib, Alan Turing Inst, 96 Euston Rd, London NW1 2DB, England
[4] Univ Glasgow, Sch Math & Stat, Glasgow GL12 8QQ, Lanark, Scotland
基金
英国工程与自然科学研究理事会;
关键词
Motif; Spectral clustering; Weighted network; Directed network; Community detection; Graph Laplacian; Bipartite network; GRAPHS;
D O I
10.1007/s41109-020-00293-z
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
Clustering is an essential technique for network analysis, with applications in a diverse range of fields. Although spectral clustering is a popular and effective method, it fails to consider higher-order structure and can perform poorly on directed networks. One approach is to capture and cluster higher-order structures using motif adjacency matrices. However, current formulations fail to take edge weights into account, and thus are somewhat limited when weight is a key component of the network under study.We address these shortcomings by exploring motif-based weighted spectral clustering methods. We present new and computationally useful matrix formulae for motif adjacency matrices on weighted networks, which can be used to construct efficient algorithms for any anchored or non-anchored motif on three nodes. In a very sparse regime, our proposed method can handle graphs with a million nodes and tens of millions of edges. We further use our framework to construct a motif-based approach for clustering bipartite networks.We provide comprehensive experimental results, demonstrating (i) the scalability of our approach, (ii) advantages of higher-order clustering on synthetic examples, and (iii) the effectiveness of our techniques on a variety of real world data sets; and compare against several techniques from the literature. We conclude that motif-based spectral clustering is a valuable tool for analysis of directed and bipartite weighted networks, which is also scalable and easy to implement.
引用
收藏
页数:41
相关论文
共 50 条
  • [21] Directed clustering in weighted networks: A new perspective
    Clemente, G. P.
    Grassi, R.
    CHAOS SOLITONS & FRACTALS, 2018, 107 : 26 - 38
  • [22] Parallel Implementation of Motif-Based Clustering for HT-SELEX Dataset
    Ono, Takayoshi
    Kato, Shintaro
    Ito, Koichi
    Minagawa, Hirotaka
    Horii, Katsunori
    Shiratori, Ikuo
    Waga, Iwao
    Aoki, Takafumi
    2019 IEEE 19TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOENGINEERING (BIBE), 2019, : 50 - 55
  • [23] Structural-aware motif-based prompt tuning for graph clustering
    Sun, Mingchen
    Yang, Mengduo
    Li, Yingji
    Mu, Dongmei
    Wang, Xin
    Wang, Ying
    INFORMATION SCIENCES, 2023, 649
  • [24] A motif-based probabilistic approach for community detection in complex networks
    Hajibabaei, Hossein
    Seydi, Vahid
    Koochari, Abbas
    JOURNAL OF INTELLIGENT INFORMATION SYSTEMS, 2024, 62 (05) : 1285 - 1303
  • [25] Motif-based protein sequence classification using neural networks
    Blekas, K
    Fotiadis, DI
    Likas, A
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2005, 12 (01) : 64 - 82
  • [26] Motif-based fold assignment
    Salwinski, L
    Eisenberg, D
    PROTEIN SCIENCE, 2001, 10 (12) : 2460 - 2469
  • [27] Motif-Based Classification of Time Series with Bayesian Networks and SVMs
    Buza, Krisztian
    Schmidt-Thieme, Lars
    ADVANCES IN DATA ANALYSIS, DATA HANDLING AND BUSINESS INTELLIGENCE, 2010, : 105 - 114
  • [28] A simpler spectral approach for clustering in directed networks
    Coste, Simon
    Stephan, Ludovic
    arXiv, 2021,
  • [29] Motif-based endomembrane trafficking
    Arora, Deepanksha
    Van Damme, Daniel
    PLANT PHYSIOLOGY, 2021, 186 (01) : 221 - 238
  • [30] Mass spectra prediction with structural motif-based graph neural networks
    Park, Jiwon
    Jo, Jeonghee
    Yoon, Sungroh
    SCIENTIFIC REPORTS, 2024, 14 (01)