Simplicispira hankyongi sp. nov., a novel denitrifying bacterium isolated from sludge

被引:22
|
作者
Siddiqi, Muhammad Zubair [1 ,2 ]
Sok, Wichny [3 ]
Choi, Gyumin [2 ]
Kim, Sang Yong [4 ]
Wee, Ji-Hyang [4 ]
Im, Wan Taek [1 ,2 ,5 ]
机构
[1] Hankyong Natl Univ, Dept Biotechnol, 327 Chungang No, Anseong 17579, Kyonggi Do, South Korea
[2] AceEMzyme Co Ltd, Acad Ind Cooperat, 327 Chungang No, Anseong 17579, Kyonggi Do, South Korea
[3] Hankyong Natl Univ, KIOCA Program, M ChET, 327 Chungang No, Anseong 17579, Kyonggi Do, South Korea
[4] Shinansan Univ, Dept Food Sci & Bio Technol, Ansan, South Korea
[5] HK Ginseng Res Ctr, 327 Chungang No, Anseong 17579, Kyonggi Do, South Korea
关键词
Simplicispira hankyongi; 16S rRNA gene sequence; Draft genome sequencing; Polyphasic taxonomy; NITROGEN-CYCLE; EVOLUTION;
D O I
10.1007/s10482-019-01341-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-stain-negative, facultatively anaerobic, motile, light-yellow, and rod-shaped bacterium, designated as NY-02(T), was isolated from the sludge of a wastewater treatment plant in Hanam City, Republic of Korea. The comparison of 16S rRNA gene sequences revealed that the strain formed a distinct lineage within the genus Simplicispira and was most closely related to S. suum SC1-8(T) (99.0%), S. limi EMB325(T) (98.3%), S. psychrophila LMG 5408(T) (98.2%), and S. piscis RSG39(T) (97.4%). Both average nucleotide identity (ANI) and DNA-DNA hybridization (DDH) values between strain NY-02(T), and its closes type strains [S. suum SC1-8(T), S. limi EMB325(T), S. psychrophila LMG 5408(T), and S. piscis RSG39(T)] were lower than the cut-off (>= 95-96% for ANI and >= 70% for DDH) to define a bacterial species. The genome comprises of 3,709,074 bp with a G + C content of 64.2 mol%. Ubiquinone 8 (Q-8) was the predominant quinone. The major fatty acids were C-16:0 and summed feature 3 (C-16:1 omega 7c and/or C-16:1 omega 6c), and the major polar lipids were phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylethanolamine. The results of the physiological, biochemical, and taxonomic analyses in addition to low ANI and DNA-DNA relatedness values (82.2% and < 34.0%, respectively) indicate that the strain NY-02(T) represents a novel species of the genus Simplicispira. The name proposed for strain NY-02(T) (= KACC 19731(T) = LMG 31165(T)) is Simplicispira hankyongi sp. nov.
引用
收藏
页码:331 / 338
页数:8
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