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Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
被引:11
|作者:
Oany, Arafat Rahman
[1
,2
]
Mia, Mamun
[1
,3
]
Pervin, Tahmina
[4
]
Alyami, Salem Ali
[5
]
Moni, Mohammad Ali
[6
]
机构:
[1] Mawlana Bhashani Sci & Technol Univ, Dept Biotechnol & Genet Engn, Fac Life Sci, Tangail 1902, Bangladesh
[2] Aristopharma Ltd, Dhaka 1000, Bangladesh
[3] AICHI Hosp Ltd, RT PCR Lab, Dhaka 1230, Bangladesh
[4] Khulna Univ, Biotechnol & Genet Engn Discipline, Life Sci Sch, Khulna 9208, Bangladesh
[5] Imam Mohammad Ibn Saud Islamic Univ IMSIU, Dept Math & Stat, Fac Sci, Riyadh 13318, Saudi Arabia
[6] Univ New South Wales, WHO Collaborating Ctr eHlth, Sch Publ Hlth & Community Med, UNSW Digital Hlth,Fac Med, Sydney, NSW 2052, Australia
来源:
关键词:
systems biology;
cervical cancer;
prognostic biomarker;
differentially expressed genes;
PROTEIN-INTERACTION NETWORKS;
FALSE DISCOVERY RATE;
HUMAN-PAPILLOMAVIRUS;
GENE;
RECURRENCE;
EXPRESSION;
ACTIVATION;
CARCINOMA;
SURVIVAL;
KEGG;
D O I:
10.3390/jpm11050363
中图分类号:
R19 [保健组织与事业(卫生事业管理)];
学科分类号:
摘要:
Nowadays, cervical cancer (CC) is treated as the leading cancer among women throughout the world. Despite effective vaccination and improved surgery and treatment, CC retains its fatality rate of about half of the infected population globally. The major screening biomarkers and therapeutic target identification have now become a global concern. In the present study, we have employed systems biology approaches to retrieve the potential biomarkers and pathways from transcriptomic profiling. Initially, we have identified 76 of each up-regulated and down-regulated gene from a total of 4643 differentially expressed genes. The up-regulatory genes mainly concentrate on immune-inflammatory responses, and the down-regulatory genes are on receptor binding and gamma-glutamyltransferase. The involved pathways associated with these genes were also assessed through pathway enrichment, and we mainly focused on different cancer pathways, immunoresponse, and cell cycle pathways. After the subsequent enrichment of these genes, we have identified 12 hub genes, which play a crucial role in CC and are verified by expression profile analysis. From our study, we have found that genes LILRB2 and CYBB play crucial roles in CC, as reported here for the first time. Furthermore, the survivability of the hub genes was also assessed, and among them, finally, CXCR4 has been identified as one of the most potential differentially expressed genes that might play a vital role in the survival of CC patients. Thus, CXCR4 could be used as a prognostic and/or diagnostic biomarker and a drug target for CC.
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页数:16
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