Aspergillus Metabolome Database for Mass Spectrometry Metabolomics

被引:5
|
作者
Gil-de-la-Fuente, Alberto [1 ,2 ]
Mamani-Huanca, Maricruz [1 ]
Stroe, Maria C. [3 ]
Saugar, Sergio [2 ]
Garcia-Alvarez, Alejandra [2 ]
Brakhage, Axel A. [3 ]
Barbas, Coral [1 ]
Otero, Abraham [1 ,2 ]
机构
[1] CEU Univ, Univ San Pablo CEU, Ctr Metabol & Bioanal CEMBIO, Dept Chem & Biochem,Fac Farm, Madrid 28660, Spain
[2] CEU Univ, Univ San Pablo CEU, Escuela Politecn Super, Dept Informat Technol, Madrid 28660, Spain
[3] Friedrich Schiller Univ Jena, Inst Microbiol, Leibniz Inst Nat Prod Res & Infect Biol, Hans Knoll Inst HKI,Dept Mol & Appl Microbiol, D-07745 Jena, Germany
关键词
Aspergillus; mass spectrometry; databases; metabolomics; annotation; identification; RESOURCE; SIGNALS; FUNGI; FEEDS; FOODS;
D O I
10.3390/jof7050387
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The Aspergillus Metabolome Database is a free online resource to perform metabolite annotation in mass spectrometry studies devoted to the genus Aspergillus. The database was created by retrieving and curating information on 2811 compounds present in 601 different species and subspecies of the genus Aspergillus. A total of 1514 scientific journals where these metabolites are mentioned were added as meta-information linked to their respective compounds in the database. A web service to query the database based on m/z (mass/charge ratio) searches was added to CEU Mass Mediator; these queries can be performed over the Aspergillus database only, or they can also include a user-selectable set of other general metabolomic databases. This functionality is offered via web applications and via RESTful services. Furthermore, the complete content of the database has been made available in .csv files and as a MySQL database to facilitate its integration into third-party tools. To the best of our knowledge, this is the first database and the first service specifically devoted to Aspergillus metabolite annotation based on m/z searches.
引用
收藏
页数:14
相关论文
共 50 条
  • [21] Basics of mass spectrometry based metabolomics
    Courant, Frederique
    Antignac, Jean-Philippe
    Dervilly-Pinel, Gaud
    Le Bizec, Bruno
    PROTEOMICS, 2014, 14 (21-22) : 2369 - 2388
  • [22] Influence of Pickling Process on Allium cepa and Citrus limon Metabolome as Determined via Mass Spectrometry-Based Metabolomics
    Farag, Mohamed A.
    Tawfike, Ahmed F.
    Donia, Marwa S.
    Ehrlich, Anja
    Wessjohann, Ludger A.
    MOLECULES, 2019, 24 (05)
  • [23] Biosynthesis-based spatial metabolome of Salvia miltiorrhiza Bunge by combining metabolomics approaches with mass spectrometry-imaging
    Tong, Qi
    Zhang, Chen
    Tu, Yan
    Chen, Junfeng
    Li, Qing
    Zeng, Zhen
    Wang, Feiyan
    Sun, Lianna
    Huang, Doudou
    Li, Mingming
    Qiu, Shi
    Chen, Wansheng
    TALANTA, 2022, 238
  • [24] A review on human fecal metabolomics: Methods, applications and the human fecal metabolome database
    Karu, Naama
    Deng, Lu
    Slae, Mordechai
    Guo, An Chi
    Sajed, Tanvir
    Huynh, Hien
    Wine, Eytan
    Wishart, David S.
    ANALYTICA CHIMICA ACTA, 2018, 1030 : 1 - 24
  • [25] Calibration-Curve-Locking Database for Semi-Quantitative Metabolomics by Gas Chromatography/Mass Spectrometry
    Hata, Kosuke
    Soma, Yuki
    Yamashita, Toshiyuki
    Takahashi, Masatomo
    Sugitate, Kuniyo
    Serino, Takeshi
    Miyagawa, Hiromi
    Suzuki, Kenichi
    Yamada, Kayoko
    Kawamukai, Takatomo
    Shiota, Teruhisa
    Izumi, Yoshihiro
    Bamba, Takeshi
    METABOLITES, 2021, 11 (04)
  • [26] Plantmetabolomics.org: mass spectrometry-based Arabidopsis metabolomics-database and tools update
    Bais, Preeti
    Moon-Quanbeck, Stephanie M.
    Nikolau, Basil J.
    Dickerson, Julie A.
    NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) : D1216 - D1220
  • [27] Taking a rosy look at the Drosophila metabolome by mass spectrometry
    Hobani, Yahya H.
    Kamleh, Anas
    Watson, David G.
    Dow, Julian A.
    COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 2009, 153A (02): : S83 - S83
  • [28] Metabolix: Metabolome profiling system based on mass spectrometry
    Nakamura, Y
    Shinbo, Y
    Asahi, H
    Altaf-Ul-Amin
    Kurokawa, K
    Oikawa, A
    Kimura, A
    Ogura, T
    Morishita, Y
    Sakurai, N
    Suzuki, H
    Nishi, T
    Hirai, MY
    Yano, M
    Saito, K
    Ohta, D
    Shibata, D
    Kitayama, M
    Kanaya, S
    SULFUR TRANSPORT AND ASSIMILATION IN PLANTS IN THE POST GENOMIC ERA, 2005, : 179 - 182
  • [29] Metabolome analysis by capillary electrophoresis-mass spectrometry
    Monton, Maria Rowena N.
    Soga, Tomoyoshi
    JOURNAL OF CHROMATOGRAPHY A, 2007, 1168 (1-2) : 237 - 246
  • [30] Mass spectrometry-based fecal metabolome analysis
    Xu, Jing
    Zhang, Qin-Feng
    Zheng, Jie
    Yuan, Bi-Feng
    Feng, Yu-Qi
    TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2019, 112 : 161 - 174