Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase

被引:6
|
作者
Muraki, Norifumi [1 ,2 ,3 ]
Ishii, Kentaro [1 ]
Uchiyama, Susumu [1 ,4 ]
Itoh, Satoru G. [1 ,2 ,3 ]
Okumura, Hisashi [1 ,2 ,3 ]
Aono, Shigetoshi [1 ,2 ,3 ]
机构
[1] Natl Inst Nat Sci, Exploratory Res Ctr Life & Living Syst ExCELLS, Dept Creat Res, 5-1 Higashiyama,Myodaiji Cho, Okazaki, Aichi 4448787, Japan
[2] Natl Inst Nat Sci, Inst Mol Sci, 5-1 Higashiyama,Myodaiji Cho, Okazaki, Aichi 4448787, Japan
[3] Grad Univ Adv Studies, Dept Struct Mol Sci, 38 Nishogonaka,Myodaiji Cho, Okazaki, Aichi 4448585, Japan
[4] Osaka Univ, Grad Sch Engn, Dept Biotechnol, 2-1 Yamadaoka, Suita, Osaka 5650871, Japan
关键词
CHAIN-FLIPPING MECHANISM; CRYSTAL-STRUCTURE; ESCHERICHIA-COLI; 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE; STRUCTURE REFINEMENT; HYDROLASE DOMAIN; PROTEINS HYPC; ENZYME; INTERMEDIATE; TRANSFERASE;
D O I
10.1038/s42003-019-0631-z
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Several accessory proteins are required for the assembly of the metal centers in hydrogenases. In NiFe-hydrogenases, CO and CN- are coordinated to the Fe in the NiFe dinuclear cluster of the active center. Though these diatomic ligands are biosynthesized enzymatically, detail mechanisms of their biosynthesis remain unclear. Here, we report the structural characterization of HypX responsible for CO biosynthesis to assemble the active site of NiFe hydrogenase. CoA is constitutionally bound in HypX. Structural characterization of HypX suggests that the formyl-group transfer will take place from N-10-formyl-THF to CoA to form formyl-CoA in the N-terminal domain of HypX, followed by decarbonylation of formyl-CoA to produce CO in the C-terminal domain though the direct experimental results are not available yet. The conformation of CoA accommodated in the continuous cavity connecting the N- and C-terminal domains will interconvert between the extended and the folded conformations for HypX catalysis.
引用
收藏
页数:12
相关论文
共 29 条
  • [21] CLONING, SEQUENCING AND CHARACTERIZATION OF THE [NIFE]HYDROGENASE-ENCODING STRUCTURAL GENES (HOXK AND HOXG) FROM AZOTOBACTER-VINELANDII
    MENON, AL
    STULTS, LW
    ROBSON, RL
    MORTENSON, LE
    GENE, 1990, 96 (01) : 67 - 74
  • [22] Magnetic and Structural Characterization of NiFe/Fe30Co70 Bilayers
    Morley, Nicola A.
    Finkel, Anastasia Caruana
    Yang, Weigang
    Reeves-McLaren, Nik
    IEEE TRANSACTIONS ON MAGNETICS, 2014, 50 (11)
  • [23] Native mass spectrometry identifies the HybG chaperone as carrier of the Fe(CN)2CO group during maturation of E. coli [NiFe]-hydrogenase 2
    Arlt, Christian
    Nutschan, Kerstin
    Haase, Alexander
    Ihling, Christian
    Taenzler, Dirk
    Sinz, Andrea
    Sawers, R. Gary
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [24] Native mass spectrometry identifies the HybG chaperone as carrier of the Fe(CN)2CO group during maturation of E. coli [NiFe]-hydrogenase 2
    Christian Arlt
    Kerstin Nutschan
    Alexander Haase
    Christian Ihling
    Dirk Tänzler
    Andrea Sinz
    R. Gary Sawers
    Scientific Reports, 11
  • [25] Oxidative Maturation and Structural Characterization of Prenylated FMN Binding by UbiD, a Decarboxylase Involved in Bacterial Ubiquinone Biosynthesis
    Marshall, Stephen A.
    Fisher, Karl
    Cheallaigh, Aisling N. I.
    White, Mark D.
    Payne, Karl A. P.
    Parker, D. A.
    Rigby, Stephen E. J.
    Leys, David
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2017, 292 (11) : 4623 - 4637
  • [26] Structural-Genetic Characterization Of Novel Butaryl co-A Dehydrogenase and Proposition of Butanol Biosynthesis Pathway in Pusillimonas ginsengisoli SBSA
    Mandal, Subhrangshu
    Debnath, Utsab
    Sarkar, Jagannath
    JOURNAL OF MOLECULAR EVOLUTION, 2021, 89 (1-2) : 81 - 94
  • [27] Structural-Genetic Characterization Of Novel Butaryl co-A Dehydrogenase and Proposition of Butanol Biosynthesis Pathway in Pusillimonas ginsengisoli SBSA
    Subhrangshu Mandal
    Utsab Debnath
    Jagannath Sarkar
    Journal of Molecular Evolution, 2021, 89 : 81 - 94
  • [28] Functional and Structural Characterization of Polysaccharide Co-polymerase Proteins Required for Polymer Export in ATP-binding Cassette Transporter-dependent Capsule Biosynthesis Pathways
    Larue, Kane
    Ford, Robert C.
    Willis, Lisa M.
    Whitfield, Chris
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2011, 286 (19) : 16658 - 16668
  • [29] Synthesis, structural characterization and electrochemical studies of [Fe2(μ- L)(CO)6] and [Fe2(μ-L)(CO)5(PPh3)] (L = pyrazine-2,3-dithiolate, quinoxaline-2,3-dithiolate and pyrido[2,3-b]pyrazine-2,3-dithiolate): Towards modeling the active site of [FeFe]-Hydrogenase
    Durgaprasad, Gummadi
    Bolligarla, Ramababu
    Das, Samar K.
    JOURNAL OF ORGANOMETALLIC CHEMISTRY, 2011, 696 (19) : 3097 - 3105