Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase

被引:6
|
作者
Muraki, Norifumi [1 ,2 ,3 ]
Ishii, Kentaro [1 ]
Uchiyama, Susumu [1 ,4 ]
Itoh, Satoru G. [1 ,2 ,3 ]
Okumura, Hisashi [1 ,2 ,3 ]
Aono, Shigetoshi [1 ,2 ,3 ]
机构
[1] Natl Inst Nat Sci, Exploratory Res Ctr Life & Living Syst ExCELLS, Dept Creat Res, 5-1 Higashiyama,Myodaiji Cho, Okazaki, Aichi 4448787, Japan
[2] Natl Inst Nat Sci, Inst Mol Sci, 5-1 Higashiyama,Myodaiji Cho, Okazaki, Aichi 4448787, Japan
[3] Grad Univ Adv Studies, Dept Struct Mol Sci, 38 Nishogonaka,Myodaiji Cho, Okazaki, Aichi 4448585, Japan
[4] Osaka Univ, Grad Sch Engn, Dept Biotechnol, 2-1 Yamadaoka, Suita, Osaka 5650871, Japan
关键词
CHAIN-FLIPPING MECHANISM; CRYSTAL-STRUCTURE; ESCHERICHIA-COLI; 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE; STRUCTURE REFINEMENT; HYDROLASE DOMAIN; PROTEINS HYPC; ENZYME; INTERMEDIATE; TRANSFERASE;
D O I
10.1038/s42003-019-0631-z
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Several accessory proteins are required for the assembly of the metal centers in hydrogenases. In NiFe-hydrogenases, CO and CN- are coordinated to the Fe in the NiFe dinuclear cluster of the active center. Though these diatomic ligands are biosynthesized enzymatically, detail mechanisms of their biosynthesis remain unclear. Here, we report the structural characterization of HypX responsible for CO biosynthesis to assemble the active site of NiFe hydrogenase. CoA is constitutionally bound in HypX. Structural characterization of HypX suggests that the formyl-group transfer will take place from N-10-formyl-THF to CoA to form formyl-CoA in the N-terminal domain of HypX, followed by decarbonylation of formyl-CoA to produce CO in the C-terminal domain though the direct experimental results are not available yet. The conformation of CoA accommodated in the continuous cavity connecting the N- and C-terminal domains will interconvert between the extended and the folded conformations for HypX catalysis.
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页数:12
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