Finite size corrections to random Boolean networks

被引:8
|
作者
Leone, Michele
Pagnani, Andrea
Parisi, Giorgio
Zagordi, Osvaldo
机构
[1] ISI Fdn, I-10133 Turin, Italy
[2] Univ Roma La Sapienza, Dipartimento Fis, I-00185 Rome, Italy
[3] Scuola Int Super Studi Avanzati, ISAS, I-34014 Trieste, Italy
关键词
message-passing algorithms; random graphs; networks;
D O I
10.1088/1742-5468/2006/12/P12012
中图分类号
O3 [力学];
学科分类号
08 ; 0801 ;
摘要
Since their introduction, Boolean networks have been traditionally studied in view of their rich dynamical behaviour under different update protocols and for their qualitative analogy with cell regulatory networks. More recently, tools borrowed from the statistical physics of disordered systems and from computer science have provided a more complete characterization of their equilibrium behaviour. However, the largest number of results have been obtained in the thermodynamic limit, which is often far from being reached when dealing with realistic instances of the problem. The numerical analysis presented here aims at comparing-for a specific family of models-the outcomes given by the heuristic belief propagation algorithm with those given by exhaustive enumeration. In the second part of the paper some analytical considerations on the validity of the annealed approximation are discussed.
引用
收藏
页数:18
相关论文
共 50 条
  • [41] A Markov model for the temporal dynamics of balanced random networks of finite size
    Lagzi, Fereshteh
    Rotter, Stefan
    FRONTIERS IN COMPUTATIONAL NEUROSCIENCE, 2014, 8
  • [42] CONDUCTANCE AND RESISTANCE JUMPS IN FINITE-SIZE RANDOM RESISTOR NETWORKS
    BATROUNI, GG
    KAHNG, B
    REDNER, S
    JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 1988, 21 (01): : L23 - L29
  • [43] DISTRIBUTION OF LARGE CURRENTS IN FINITE-SIZE RANDOM RESISTOR NETWORKS
    DUXBURY, PM
    GUYER, RA
    MACHTA, J
    PHYSICAL REVIEW B, 1995, 51 (10): : 6711 - 6714
  • [44] Distribution of large currents in finite-size random resistor networks
    Duxbury, P. M.
    Guyer, R. A.
    Machta, J.
    Physical Review B: Condensed Matter, 51 (10):
  • [45] Finite-size corrections in random matrix theory and Odlyzko's dataset for the Riemann zeros
    Forrester, Peter J.
    Mays, Anthony
    PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 2015, 471 (2182):
  • [46] Optimal Control Rules for Random Boolean Networks
    Karlsen, Matthew R.
    Moschoyiannis, Sotiris K.
    COMPLEX NETWORKS AND THEIR APPLICATIONS VII, VOL 1, 2019, 812 : 828 - 840
  • [47] Stochastic coupling of two random Boolean networks
    Ho, MC
    Hung, YC
    Jiang, IM
    PHYSICS LETTERS A, 2005, 344 (01) : 36 - 42
  • [48] Influence and Dynamic Behavior in Random Boolean Networks
    Seshadhri, C.
    Vorobeychik, Yevgeniy
    Mayo, Jackson R.
    Armstrong, Robert C.
    Ruthruff, Joseph R.
    PHYSICAL REVIEW LETTERS, 2011, 107 (10)
  • [49] ON FORCING FUNCTIONS IN KAUFFMAN RANDOM BOOLEAN NETWORKS
    STAUFFER, D
    JOURNAL OF STATISTICAL PHYSICS, 1987, 46 (3-4) : 789 - 794
  • [50] A Computational Model Based on Random Boolean Networks
    Dubrova, Elena
    Teslenko, Maxim
    Tenhunen, Hannu
    2007 2ND BIO-INSPIRED MODELS OF NETWORKS, INFORMATION AND COMPUTING SYSTEMS (BIONETICS), 2007, : 23 - 30