Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius

被引：72

作者：

Rosenfeld, Jeffrey A. ^{[1
,2
,3
]}

Reeves, Darryl ^{[4
,5
,6
]}

Brugler, Mercer R. ^{[1
,2
,7
]}

Narechania, Apurva ^{[1
,2
]}

Simon, Sabrina ^{[1
,8
]}

Durrett, Russell ^{[4
,5
]}

Foox, Jonathan ^{[1
,2
]}

Shianna, Kevin ^{[9
]}

Schatz, Michael C. ^{[10
]}

Gandara, Jorge ^{[4
,5
]}

Afshinnekoo, Ebrahim ^{[4
,5
]}

Lam, Ernest T. ^{[11
]}

Hastie, Alex R. ^{[11
]}

Chan, Saki ^{[11
]}

Cao, Han ^{[11
]}

Saghbini, Michael ^{[11
]}

Kentsis, Alex ^{[12
,13
]}

Planet, Paul J. ^{[1
,2
,14
]}

Kholodovych, Vladyslav ^{[15
]}

Tessler, Michael ^{[1
,2
]}

Baker, Richard ^{[1
,2
]}

DeSalle, Rob ^{[1
,2
]}

Sorkin, Louis N. ^{[2
]}

Kolokotronis, Sergios-Orestis ^{[1
,2
,16
]}

Siddall, Mark E. ^{[1
,2
]}

Amato, George ^{[1
,2
]}

Mason, Christopher E. ^{[4
,5
,6
,17
]}

机构：

[1] Amer Museum Nat Hist, Sackler Inst Comparat Genom, New York, NY 10024 USA

[2] Amer Museum Nat Hist, Div Invertebrate Zool, New York, NY 10024 USA

[3] Rutgers State Univ, Canc Inst New Jersey, New Brunswick, NJ 08908 USA

[4] Weill Cornell Med Coll, Dept Physiol & Biophys, New York, NY 10065 USA

[5] HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsau, New York, NY 10065 USA

[6] Triinst Training Program Computat Biol & Med, New York, NY 10065 USA

[7] CUNY, NYC Coll Technol, Dept Biol Sci, Brooklyn, NY 11201 USA

[8] Wageningen Univ, Biosystemat, NL-6708 PB Wageningen, Netherlands

[9] Illumina Inc, 5200 Illumina Way, San Diego, CA 92122 USA

[10] Cold Spring Harbor Lab, Simons Ctr Quantitat Biol, Cold Spring Harbor, NY 11724 USA

[11] BioNanoGenomics Inc, 9640 Towne Ctr Dr Ste 100, San Diego, CA 92121 USA

[12] Mem Sloan Kettering Canc Ctr, Mol Pharmacol & Chem Program, Dept Pediat, Sloan Kettering Inst, New York, NY 10065 USA

[13] Cornell Univ, Weill Cornell Med Coll, Dept Pediat, Mem Sloan Kettering Canc Ctr, New York, NY 10065 USA

[14] Columbia Univ Coll Phys & Surg, Div Pediat Infect Dis, New York, NY 10032 USA

[15] Rutgers Biomed & Hlth Sci, High Performance & Res Comp Grp, Newark, NJ 07103 USA

[16] Fordham Univ, Dept Biol Sci, Bronx, NY 10458 USA

[17] Feil Family Brain & Mind Res Inst, New York, NY 10065 USA

来源：

NATURE COMMUNICATIONS | 2016年 / 7卷

基金：

美国国家卫生研究院;

关键词：

INSECTICIDE RESISTANCE; WOLBACHIA; METALLOPROTEASE; SUPERGROUP; DIVERSITY; PIPELINE; DATABASE; REVEALS; CLONING; VECTOR;

D O I：

10.1038/ncomms10164

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The common bed bug (Cimex lectularius) has been a persistent pest of humans for thousands of years, yet the genetic basis of the bed bug's basic biology and adaptation to dense human environments is largely unknown. Here we report the assembly, annotation and phylogenetic mapping of the 697.9-Mb Cimex lectularius genome, with an N50 of 971 kb, using both long and short read technologies. A RNA-seq time course across all five developmental stages and male and female adults generated 36,985 coding and noncoding gene models. The most pronounced change in gene expression during the life cycle occurs after feeding on human blood and included genes from the Wolbachia endosymbiont, which shows a simultaneous and coordinated host/commensal response to haematophagous activity. These data provide a rich genetic resource for mapping activity and density of C. lectularius across human hosts and cities, which can help track, manage and control bed bug infestations.

引用

页数：10

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