A Forensic Detection Method for Hallucinogenic Mushrooms via High-Resolution Melting (HRM) Analysis

被引:5
|
作者
Zhang, Xiaochun [1 ,2 ]
Yu, Huan [1 ,2 ]
Yang, Qi [1 ,2 ]
Wang, Ziwei [1 ,2 ]
Xia, Ruocheng [2 ,3 ]
Chen, Chong [2 ,4 ]
Qu, Yiling [1 ,2 ]
Tan, Rui [1 ,2 ]
Shi, Yan [2 ]
Xiang, Ping [2 ]
Zhang, Suhua [2 ]
Li, Chengtao [1 ,2 ]
机构
[1] Soochow Univ, Sch Med, Dept Forens Sci, Suzhou 215123, Peoples R China
[2] Minist Justice, Acad Forens Sci, Shanghai Forens Serv Platform, Shanghai Key Lab Forens Med, Shanghai 200063, Peoples R China
[3] Wenzhou Med Univ, Sch Basic Med Sci, Dept Forens Med, Wenzhou 325035, Peoples R China
[4] Xi An Jiao Tong Univ, Coll Med & Forens, Hlth Sci Ctr, Xian 710061, Peoples R China
关键词
polymerase chain reaction (PCR); high-resolution melting (HRM); DNA barcoding; internal transcribed spacer (ITS); Psilocybe cubensis;
D O I
10.3390/genes12020199
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In recent years, trafficking and abuse of hallucinogenic mushrooms have become a serious social problem. It is therefore imperative to identify hallucinogenic mushrooms of the genus Psilocybe for national drug control legislation. An internal transcribed spacer (ITS) is a DNA barcoding tool utilized for species identification. Many methods have been used to discriminate the ITS region, but they are often limited by having a low resolution. In this study, we sought to analyze the ITS and its fragments, ITS1 and ITS2, by using high-resolution melting (HRM) analysis, which is a rapid and sensitive method for evaluating sequence variation within PCR amplicons. The ITS HRM assay was tested for specificity, reproducibility, sensitivity, and the capacity to analyze mixture samples. It was shown that the melting temperatures of the ITS, ITS1, and ITS2 of Psilocybe cubensis were 83.72 +/- 0.01, 80.98 +/- 0.06, and 83.46 +/- 0.08 degrees C, and for other species, we also obtained species-specific results. Finally, we performed ITS sequencing to validate the presumptive taxonomic identity of our samples, and the sequencing output significantly supported our HRM data. Taken together, these results indicate that the HRM method can quickly distinguish the DNA barcoding of Psilocybe cubensis and other fungi, which can be utilized for drug trafficking cases and forensic science.
引用
下载
收藏
页码:1 / 14
页数:14
相关论文
共 50 条
  • [1] High-Resolution Melting (HRM) of Hypervariable Mitochondrial DNA Regions for Forensic Science
    Rocha, Alipio dos Santos
    Soares de Amorim, Isis Salviano
    Simao, Tatiana de Almeida
    da Fonseca, Adenilson de Souza
    Garrido, Rodrigo Grazinoli
    Mencalha, Andre Luiz
    JOURNAL OF FORENSIC SCIENCES, 2018, 63 (02) : 536 - 540
  • [2] Detection of Somatic Mutations by High-Resolution DNA Melting (HRM) Analysis in Multiple Cancers
    Gonzalez-Bosquet, Jesus
    Calcei, Jacob
    Wei, Jun S.
    Garcia-Closas, Montserrat
    Sherman, Mark E.
    Hewitt, Stephen
    Vockley, Joseph
    Lissowska, Jolanta
    Yang, Hannah P.
    Khan, Javed
    Chanock, Stephen
    PLOS ONE, 2011, 6 (01):
  • [3] Rapid detection of Echinococcus species by a high-resolution melting (HRM) approach
    Santos, Guilherme Brzoskowski
    Espinola, Sergio Martin
    Ferreira, Henrique Bunselmeyer
    Margis, Rogerio
    Zaha, Arnaldo
    PARASITES & VECTORS, 2013, 6
  • [4] Rapid detection of Echinococcus species by a high-resolution melting (HRM) approach
    Guilherme Brzoskowski Santos
    Sergio Martín Espínola
    Henrique Bunselmeyer Ferreira
    Rogerio Margis
    Arnaldo Zaha
    Parasites & Vectors, 6
  • [5] High-resolution melting (HRM) analysis as a feasible method for detecting spinal muscular atrophy via dried blood spots
    Er, Tze-Kiong
    Kan, Tzu-Min
    Su, Yu-Fa
    Liu, Ta-Chih
    Chang, Jan-Gowth
    Hung, Shih-Ya
    Jong, Yuh-Jyh
    CLINICA CHIMICA ACTA, 2012, 413 (21-22) : 1781 - 1785
  • [6] DETECTION OF COMMON BETA-THALASSAEMIA MUTATIONS IN THE CHINESE BY HIGH-RESOLUTION MELTING (HRM) ANALYSIS
    Wong, Anthony T. C.
    Wong, Chris L. P.
    Ma, Edmond S. K.
    INTERNATIONAL JOURNAL OF LABORATORY HEMATOLOGY, 2012, 34 : 148 - 148
  • [7] High-resolution melting (HRM) analysis for the detection of single nucleotide polymorphisms in microRNA target sites
    Lin, Pei-Chin
    Liu, Ta-Chih
    Chang, Chun-Chi
    Chen, Yung-Hsiu
    Chang, Jan-Gowth
    CLINICA CHIMICA ACTA, 2012, 413 (13-14) : 1092 - 1097
  • [8] Rapid detection and identification of Theileria equi and Babesia caballi by high-resolution melting (HRM) analysis
    Salim, Bashir
    Bakheit, Mohammed Ahmed
    Sugimoto, Chihiro
    PARASITOLOGY RESEARCH, 2013, 112 (11) : 3883 - 3886
  • [9] Rapid detection and identification of Theileria equi and Babesia caballi by high-resolution melting (HRM) analysis
    Bashir Salim
    Mohammed Ahmed Bakheit
    Chihiro Sugimoto
    Parasitology Research, 2013, 112 : 3883 - 3886
  • [10] High-Resolution Melting (HRM) for rapid MLST analysis of Neisseria meningitidis
    de Souza Santos, Debora Ribeiro
    do Carmo, Cleber Nascimento
    de Filippis, Ivano
    JOURNAL OF MICROBIOLOGICAL METHODS, 2022, 200