SCOPE: A normalization and copy number estimation method for single-cell DNA sequencing

被引:0
|
作者
Wang, Rujin [1 ]
Lin, Danyu [1 ]
Jiang, Yuchao [1 ]
机构
[1] Univ N Carolina, Chapel Hill, NC 27515 USA
关键词
D O I
10.1158/1538-7445.AM2019-5094
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
5094
引用
收藏
页数:2
相关论文
共 50 条
  • [21] Assessment of megabase-scale somatic copy number variation using single-cell sequencing
    Knouse, Kristin A.
    Wu, Jie
    Amon, Angelika
    GENOME RESEARCH, 2016, 26 (03) : 376 - 384
  • [22] Detecting copy-number alterations from single-cell chromatin sequencing data by AtaCNA
    Wang, Xiaochen
    Jin, Zijie
    Shi, Yang
    Xi, Ruibin
    CELL REPORTS METHODS, 2025, 5 (01):
  • [23] CODEX: a normalization and copy number variation detection method for whole exome sequencing
    Jiang, Yuchao
    Oldridge, Derek A.
    Diskin, Sharon J.
    Zhang, Nancy R.
    NUCLEIC ACIDS RESEARCH, 2015, 43 (06) : e39
  • [24] COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data
    Etienne Sollier
    Jack Kuipers
    Koichi Takahashi
    Niko Beerenwinkel
    Katharina Jahn
    Nature Communications, 14
  • [25] COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data
    Sollier, Etienne
    Kuipers, Jack
    Takahashi, Koichi
    Beerenwinkel, Niko
    Jahn, Katharina
    NATURE COMMUNICATIONS, 2023, 14 (01)
  • [27] Rapid single-cell copy-number aberration analysis using high- throughput sequencing
    Graier, T.
    Auer, M.
    Heitzer, E.
    Ulz, P.
    Perakis, S.
    Speicher, M. R.
    Geigl, J. B.
    EUROPEAN JOURNAL OF CANCER, 2017, 72 : S24 - S24
  • [28] Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing
    Baslan, Timour
    Kendall, Jude
    Volyanskyy, Konstantin
    McNamara, Katherine
    Cox, Hilary
    D'Italia, Sean
    Ambrosio, Frank
    Riggs, Michael
    Rodgers, Linda
    Leotta, Anthony
    Song, Junyan
    Mao, Yong
    Wu, Jie
    Shah, Ronak
    Gularte-Merida, Rodrigo
    Chadalavada, Kalyani
    Nanjangud, Gouri
    Varadan, Vinay
    Gordon, Assaf
    Curtis, Christina
    Krasnitz, Alex
    Dimitrova, Nevenka
    Harris, Lyndsay
    Wigler, Michael
    Hicks, James
    ELIFE, 2020, 9 : 1 - 21
  • [29] CODEX: A Normalization and Copy Number Variation Detection Method for Whole-Exome Sequencing
    Jiang, Yuchao
    Oldridge, Derek A.
    Diskin, Sharon J.
    Zhang, Nancy R.
    HUMAN HEREDITY, 2016, 81 (02) : 54 - 55
  • [30] CODEX: a normalization and copy number variation detection method for whole-exome sequencing
    Jiang, Yuchao
    Oldridge, Derek A.
    Diskin, Sharon J.
    Zhang, Nancy R.
    CANCER RESEARCH, 2015, 75