Towards inverse modeling of intratumor heterogeneity

被引:1
|
作者
Brutovsky, Branislav [1 ]
Horvath, Denis [2 ]
机构
[1] Safarik Univ, Fac Sci, Dept Biophys, Jesenna 5, Kosice 04154, Slovakia
[2] Safarik Univ, Fac Sci, Ctr Interdisciplinary Biosci, Kosice 04154, Slovakia
来源
OPEN PHYSICS | 2015年 / 13卷 / 01期
关键词
Markov processes; intratumor heterogeneity; phenotype switching; CANCER STEM-CELLS; STOCHASTIC GENE-EXPRESSION; PHENOTYPIC DIVERSITY; EPIGENETIC LANDSCAPE; NOISE; PLASTICITY; EVOLUTION; TRANSITIONS; ATTRACTORS; SURVIVAL;
D O I
10.1515/phys-2015-0032
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Development of resistance limits efficiency of present anticancer therapies and preventing it remains a big challenge in cancer research. It is accepted, at the intuitive level, that resistance emerges as a consequence of the heterogeneity of cancer cells at the molecular, genetic and cellular levels. Produced by many sources, tumor heterogeneity is extremely complex time dependent statistical characteristics which may be quantified by measures defined in many different ways, most of them coming from statistical mechanics. In this paper, we apply the Markovian framework to relate population heterogeneity to the statistics of the environment. As, from an evolutionary viewpoint, therapy corresponds to a purposeful modification of the cells' fitness landscape, we assume that understanding general relationship between the spatio-temporal statistics of a tumor microenvironment and intratumor heterogeneity will allow to conceive the therapy as an inverse problem and to solve it by optimization techniques. To account for the inherent stochasticity of biological processes at cellular scale, the generalized distance based concept was applied to express distances between probabilistically described cell states and environmental conditions, respectively.
引用
收藏
页码:232 / 241
页数:10
相关论文
共 50 条
  • [31] Intratumor heterogeneity in human parathyroid tumors
    Verdelli, C.
    Tavanti, G. S.
    Corbetta, S.
    HISTOLOGY AND HISTOPATHOLOGY, 2020, 35 (11) : 1213 - 1228
  • [32] Intratumor heterogeneity in thyroid cancer progression
    Pantina, Vincenzo Davide
    CANCER RESEARCH, 2023, 83 (07)
  • [33] Intratumor heterogeneity: Nature and biological significance
    T. S. Gerashchenko
    E. V. Denisov
    N. V. Litviakov
    M. V. Zavyalova
    S. V. Vtorushin
    M. M. Tsyganov
    V. M. Perelmuter
    N. V. Cherdyntseva
    Biochemistry (Moscow), 2013, 78 : 1201 - 1215
  • [34] Metabolic intratumor heterogeneity of breast cancer
    Giskeodegard, Guro Fannelob
    Badia, Marina Perea
    Bofin, Anna
    Madssen, Torfinn Stove
    Lundgren, Steinar
    Fjosne, Hans
    Bathen, Tone Frost
    JOURNAL OF CLINICAL ONCOLOGY, 2017, 35
  • [35] CRISPR-Barcoding for Intratumor Genetic Heterogeneity Modeling and Functional Analysis of Oncogenic Driver Mutations
    Guernet, Alexis
    Mungamuri, Sathish Kumar
    Cartier, Dorthe
    Sachidanandam, Ravi
    Jayaprakash, Anitha
    Adriouch, Sahil
    Vezain, Myriam
    Charbonnier, Francoise
    Rohkin, Guy
    Coutant, Sophie
    Yao, Shen
    Ainani, Hassan
    Alexandre, David
    Tournier, Isabelle
    Boyer, Olivier
    Aaronson, Stuart A.
    Anouar, Youssef
    Grumolato, Luca
    MOLECULAR CELL, 2016, 63 (03) : 526 - 538
  • [36] INTRATUMOR HETEROGENEITY AND THE FAILURE OF SPECIFIC ADOPTIVE IMMUNOTHERAPY
    HINES, DL
    PROCEEDINGS OF THE AMERICAN ASSOCIATION FOR CANCER RESEARCH, 1988, 29 : 400 - 400
  • [37] Drivers of dynamic intratumor heterogeneity and phenotypic plasticity
    Biswas, Antara
    De, Subhajyoti
    AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY, 2021, 320 (05): : C750 - C760
  • [38] Intratumor Heterogeneity and Circulating Tumor Cell Clusters
    Ahmed, Zafarali
    Gravel, Simon
    MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (09) : 2135 - 2144
  • [39] Intratumor heterogeneity: predicting and preventing therapeutic resistance
    Ziogas, Demosthenes E.
    Zerdes, Ioannis
    Lykoudis, Efstathios G.
    Glantzounis, Georgios
    Roukos, Dimitrios H.
    BIOMARKERS IN MEDICINE, 2016, 10 (07) : 681 - 684
  • [40] Mass Spectrometry Imaging for the Investigation of Intratumor Heterogeneity
    Balluff, B.
    Hanselmann, M.
    Heeren, R. M. A.
    APPLICATIONS OF MASS SPECTROMETRY IMAGING TO CANCER, 2017, 134 : 201 - 230