DNA sequences from mobile genetic elements, a hidden half of the human genome

被引:8
|
作者
Medina, Julie [1 ]
Perron, Herve [1 ,2 ,3 ]
机构
[1] GeNeuro Innovat, Bioparc Laennec,60,Ave Rockefeller, F-69008 Lyon, France
[2] GeNeuro, 18 Chemin Aulx,1228 Plan Les Ouates, Geneva, Switzerland
[3] Univ Lyon 1, Fac Med Laennec, F-69008 Lyon, France
来源
M S-MEDECINE SCIENCES | 2017年 / 33卷 / 02期
关键词
HUMAN ENDOGENOUS RETROVIRUSES; HUMAN-POPULATIONS; MAMMARY-TUMOR; W ELEMENTS; INSERTIONS; EVOLUTION; DISEASE; ENDOGENIZATION; CLASSIFICATION; EXPRESSION;
D O I
10.1051/medsci/20173302010
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Current data estimate that mobile genetic elements represent more than one-half of the human genome. The literature is constantly updating data following the evolution of sequencing techniques and of algorithms for genome analyses. This review aims to provide an overview of the topic showing the complexity given by the various designations and classifications found in scientific papers. A particular focus is made on retrotransposons, including Endogenous RetroViruses (ERV), to introduce a second article focusing on their activation and their involvement in physiological functions and/or pathological mechanisms associated with diseases like multiple sclerosis (MS) or amyotrophic lateral sclerosis (ALS).
引用
收藏
页码:151 / 158
页数:8
相关论文
共 50 条
  • [31] Meeting report: mobile genetic elements and genome plasticity 2018
    Abrams, John M.
    Arkhipova, Irina R.
    Belfort, Marlene
    Boeke, Jef D.
    Curcio, M. Joan
    Faulkner, Geoffrey J.
    Goodier, John L.
    Lehmann, Ruth
    Levin, Henry L.
    MOBILE DNA, 2018, 9
  • [32] An integrated encyclopedia of DNA elements in the human genome
    Dunham, Ian
    Kundaje, Anshul
    Aldred, Shelley F.
    Collins, Patrick J.
    Davis, CarrieA.
    Doyle, Francis
    Epstein, Charles B.
    Frietze, Seth
    Harrow, Jennifer
    Kaul, Rajinder
    Khatun, Jainab
    Lajoie, Bryan R.
    Landt, Stephen G.
    Lee, Bum-Kyu
    Pauli, Florencia
    Rosenbloom, Kate R.
    Sabo, Peter
    Safi, Alexias
    Sanyal, Amartya
    Shoresh, Noam
    Simon, Jeremy M.
    Song, Lingyun
    Trinklein, Nathan D.
    Altshuler, Robert C.
    Birney, Ewan
    Brown, James B.
    Cheng, Chao
    Djebali, Sarah
    Dong, Xianjun
    Dunham, Ian
    Ernst, Jason
    Furey, Terrence S.
    Gerstein, Mark
    Giardine, Belinda
    Greven, Melissa
    Hardison, Ross C.
    Harris, Robert S.
    Herrero, Javier
    Hoffman, Michael M.
    Iyer, Sowmya
    Kellis, Manolis
    Khatun, Jainab
    Kheradpour, Pouya
    Kundaje, Anshul
    Lassmann, Timo
    Li, Qunhua
    Lin, Xinying
    Marinov, Georgi K.
    Merkel, Angelika
    Mortazavi, Ali
    NATURE, 2012, 489 (7414) : 57 - 74
  • [34] Defining functional DNA elements in the human genome
    Kellis, Manolis
    Wold, Barbara
    Snyder, Michael P.
    Bernstein, Bradley E.
    Kundaje, Anshul
    Marinov, Georgi K.
    Ward, Lucas D.
    Birney, Ewan
    Crawford, Gregory E.
    Dekker, Job
    Dunham, Ian
    Elnitski, Laura L.
    Farnham, Peggy J.
    Feingold, Elise A.
    Gerstein, Mark
    Giddings, Morgan C.
    Gilbert, David M.
    Gingeras, Thomas R.
    Green, Eric D.
    Guigo, Roderic
    Hubbard, Tim
    Kent, Jim
    Lieb, Jason D.
    Myers, Richard M.
    Pazin, Michael J.
    Ren, Bing
    Stamatoyannopoulos, John A.
    Weng, Zhiping
    White, Kevin P.
    Hardison, Ross C.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (17) : 6131 - 6138
  • [35] The role of mobile DNA elements in the dynamics of plant genome plasticity
    Emmerson, Robyn
    Catoni, Marco
    JOURNAL OF EXPERIMENTAL BOTANY, 2025,
  • [36] Mobile DNA Elements in Primate and Human Evolution
    Xing, Jinchuan
    Witherspoon, David J.
    Ray, David A.
    Batzer, Mark A.
    Jorde, Lynn B.
    YEARBOOK OF PHYSICAL ANTHROPOLOGY, VOL 50, 2007, 50 : 2 - 19
  • [37] oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements
    Li, Xiaobin
    Xie, Yingzhou
    Liu, Meng
    Tai, Cui
    Sung, Jingyong
    Deng, Zixin
    Ou, Hong-Yu
    NUCLEIC ACIDS RESEARCH, 2018, 46 (W1) : W229 - W234
  • [38] A novel bioinformatics strategy for unveiling hidden characteristics in genome sequences and searching in silico for genetic signal sequences
    Abe, T
    Kanaya, S
    Kinouchi, M
    Kosaka, Y
    Ikemura, T
    8TH WORLD MULTI-CONFERENCE ON SYSTEMICS, CYBERNETICS AND INFORMATICS, VOL VII, PROCEEDINGS: APPLICATIONS OF INFORMATICS AND CYBERNETICS IN SCIENCE AND ENGINEERING, 2004, : 105 - 112
  • [39] UBIQUITOUS FAMILY OF REPEATED DNA SEQUENCES IN THE HUMAN GENOME
    HOUCK, CM
    RINEHART, FP
    SCHMID, CW
    JOURNAL OF MOLECULAR BIOLOGY, 1979, 132 (03) : 289 - 306
  • [40] Removal of mobile genetic elements from the genome of Clostridioides difficile and the implications for the organism's biology
    Hussain, Haitham
    Nubgan, Amer
    Rodriguez, Cesar
    Imwattana, Korakrit
    Knight, Daniel R.
    Parthala, Valerija
    Mullany, Peter
    Goh, Shan
    FRONTIERS IN MICROBIOLOGY, 2024, 15