stringgaussnet: from differentially expressed genes to semantic and Gaussian networks generation

被引:0
|
作者
Chaplais, Emmanuel [1 ,2 ]
Garchon, Henri-Jean [1 ,2 ,3 ]
机构
[1] INSERM, U1173, F-78180 Montigny Le Bretonneux, France
[2] Univ Versailles St Quentin, F-78180 Montigny Le Bretonneux, France
[3] Hop Ambroise Pare, Div Genet, F-92100 Boulogne, France
关键词
REVEALS;
D O I
10.1093/bioinformatics/btv450
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: Knowledge-based and co-expression networks are two kinds of gene networks that can be currently implemented by sophisticated but distinct tools. We developed stringgaussnet, an R package that integrates both approaches, starting from a list of differentially expressed genes.
引用
收藏
页码:3865 / 3867
页数:3
相关论文
共 50 条
  • [41] Multiobjective Ranked Selection of Differentially Expressed Genes
    Sarkar, Mrityunjay
    Majumder, Aurpan
    PROCEEDINGS OF 2ND INTERNATIONAL CONFERENCE ON INTELLIGENT COMPUTING AND APPLICATIONS, 2017, 467 : 75 - 92
  • [42] Differentially Expressed Genes in EEC and LMS Syndromes
    Yin, Wei
    Song, Yaling
    Du, Yangge
    Bian, Zhuan
    PLOS ONE, 2015, 10 (06):
  • [43] Statistical methods for ranking differentially expressed genes
    Per Broberg
    Genome Biology, 4
  • [44] A revolutionary approach to analyze differentially expressed genes
    不详
    FASEB JOURNAL, 1999, 13 (07): : A1593 - A1593
  • [45] A new framework for identifying differentially expressed genes
    Li, Jie
    Tang, Xianglong
    Zhao, Wei
    Huang, Jianhua
    PATTERN RECOGNITION, 2007, 40 (11) : 3249 - 3262
  • [46] Efficacy of SSHPCR in isolating differentially expressed genes
    Ji, W
    Wright, MB
    Cai, L
    Flament, A
    Lindpaintner, K
    BMC GENOMICS, 2002, 3 (1)
  • [47] Differentially expressed genes in the rat cochlear nucleus
    Friedland, D. R.
    Popper, P.
    Eernisse, R.
    Cioffi, J. A.
    NEUROSCIENCE, 2006, 142 (03) : 753 - 768
  • [48] Identification of differentially expressed genes in childhood asthma
    Zhang, Nian-Zhen
    Chen, Xiu-Juan
    Mu, Yu-Hua
    Wang, Hewen
    MEDICINE, 2018, 97 (21)
  • [49] Genes differentially expressed in titanium implant healing
    Ogawa, T.
    Nishimura, I.
    JOURNAL OF DENTAL RESEARCH, 2006, 85 (06) : 566 - 570
  • [50] Differentially expressed genes in head and neck cancer
    Gottschlich, S
    Folz, BJ
    Lippert, BM
    Niemann, AM
    Goeroegh, T
    Werner, JA
    LARYNGOSCOPE, 1998, 108 (05): : 639 - 644