Comparison of the phylogenetic performance of neodermatan mitochondrial protein-coding genes

被引：16
|
作者：
Hardman, Michael [1 ]
Hardman, Lotta M. [1 ]
机构：
[1] Vantaa Res Ctr, Finnish Forest Res Inst, Vantaa 01301, Finland
来源：
ZOOLOGICA SCRIPTA | 2006年 / 35卷 / 06期
关键词：
D O I：
10.1111/j.1463-6409.2006.00248.x
中图分类号：
Q [生物科学];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
We examined the ability of all protein-coding genes of 11 neodermatan mitochondrial genomes to recover the phylogeny of their combination. We subsampled randomly selected lengths (1-6000 bp) of contiguous sequence to consider the effect of length (100-6000 bp) on performance. All genes performed as well as randomly selected regions except ND2 (better) and ND5 (worse). All expected nodes were recovered (> 90% bootstrap) when 4.0 Kb had been sampled; 40 samples of 100 performed as well as four samples of 1000.
引用
收藏
页码：655 / 665
页数：11
相关论文
共 50 条
  • [21] Introns in protein-coding genes in Archaea
    Watanabe, Y
    Yokobori, S
    Inaba, T
    Yamagishi, A
    Oshima, T
    Kawarabayasi, Y
    Kikuchi, H
    Kita, K
    FEBS LETTERS, 2002, 510 (1-2) : 27 - 30
  • [22] Origins of new protein-coding genes
    不详
    SCIENCE, 2021, 371 (6531) : 779 - 780
  • [23] Analysis of codon usage pattern of mitochondrial protein-coding genes in different hookworms
    Deb, Bornali
    Uddin, Arif
    Mazumder, Gulshana Akthar
    Chakraborty, Supriyo
    MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2018, 219 : 24 - 32
  • [24] Analysis of mitochondrial protein-coding genes ofAntheraea assamensis: Muga silkworm of Assam
    Uddin, Arif
    Chakraborty, Supriyo
    ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY, 2021, 106 (01)
  • [25] Nucleotide substitution rates for the full set of mitochondrial protein-coding genes in Coleoptera
    Pons, Joan
    Ribera, Ignacio
    Bertranpetit, Jaume
    Balke, Michael
    MOLECULAR PHYLOGENETICS AND EVOLUTION, 2010, 56 (02) : 796 - 807
  • [26] Comparative analysis of sequences preceding protein-coding mitochondrial genes in flowering plants
    Hazle, Thomas
    Bonen, Linda
    MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (05) : 1101 - 1112
  • [27] Mitochondrial-encoded endonucleases drive recombination of protein-coding genes in yeast
    Wu, Baojun
    Hao, Weilong
    ENVIRONMENTAL MICROBIOLOGY, 2019, 21 (11) : 4233 - 4240
  • [28] Phylogenetic relationships among insect orders based on several nuclear protein-coding genes
    Ishiwata, Keisuke
    Sasaki, Go
    Miyata, Takashi
    Su, Zhi Hui
    GENES & GENETIC SYSTEMS, 2009, 84 (06) : 446 - 446
  • [29] Updated phylogenetic scheme based on the complete mitochondrial protein-coding sequence for common parasitic flatworms
    Le, T. H.
    Sato, Y.
    De, N.
    Nga, N.
    Nhung, N.
    Vu, T. T.
    Sithithaworn, P.
    Mcmanus, D. P.
    Agatsuma, T.
    David, B.
    TROPICAL MEDICINE & INTERNATIONAL HEALTH, 2011, 16 : 222 - 222
  • [30] The mitochondrial genome of lberobaenia (Coleoptera: Iberobaeniidae): first rearrangement of protein-coding genes in the beetles
    Andujar, Carmelo
    Arribas, Paula
    Linard, Benjamin
    Kundrata, Robin
    Bocak, Ladislav
    Vogler, Alfried P.
    MITOCHONDRIAL DNA PART A, 2017, 28 (1-2) : 156 - 158
12345