Analysis of deletion phenotypes and GFP fissions of 21 novel Saccharomyces cerevisiae open reading frames

被引:0
|
作者
Brachat, A
Liebundguth, N
Rebischung, C
Lemire, S
Schärer, F
Hoepfner, D
Demchyshyn, V
Howald, I
Düsterhöft, A
Möstl, D
Pöhlmann, R
Kötter, P
Hall, MN
Wach, A
Philippsen, P
机构
[1] Univ Basel, Biozentrum, Lehrstuhl Angew Mikrobiol, CH-4056 Basel, Switzerland
[2] Natl Acad Sci Ukraine, Inst Biochem, Lvov, Ukraine
[3] Ecole Super Biotechnol Strasbourg, F-67400 Illkirch Graffenstaden, France
[4] Bureco Corp, CH-4310 Rheinfelden, Switzerland
[5] Qiagen Gmbh, D-40724 Hilden, Germany
[6] Univ Basel, Biozentrum, Biochem Abt, CH-4056 Basel, Switzerland
[7] Univ Basel, Biozentrum, Abt Zellbiol, CH-4056 Basel, Switzerland
[8] EUROSCARF, Inst Microbiol, Biozentrum N250, D-60439 Frankfurt, Germany
关键词
functional analysis; PCR-targeting; GFP; YNL018c; YNL019c; YNL020c; YNL021w; YNL022c; YNL023c; YNL026w; YNL032w; YNL033w; YNL034w; YNL035c; YNL040w; YNL072w; YNL075w; YNL078w; YNL080c; YNL081c; YNL219c; YNL223w; YNL224c; YNL225c;
D O I
10.1002/(SICI)1097-0061(200002)16:3<241::AID-YEA517>3.3.CO;2-K
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
As part of EUROFAN (European Functional Analysis Network), we investigated 21 novel yeast open reading frames (ORFs) by growth and sporulation tests of deletion mutants. Two genes (YNL026w and YNL075w) are essential for mitotic growth and three deletion strains (ynl080c, ynl081c and ynl225c) grew with reduced rates. Two genes (YNL223w and YNL225c) were identified to be required for sporulation. In addition we also performed green fluorescent protein (GFP) tagging for localization studies. GFP labelling indicated the spindle pole body (Ynl225c-GFP) and the nucleus (Ynl075w-GFP) as the sites of action of two proteins. Ynl080c-GFP and Ynl081c-GFP fluorescence was visible in dot-shaped and elongated structures, whereas the Ynl022c-GFP signal was always found as one spot per cell, usually in the vicinity of nuclear DNA. The remaining C-terminal GFP fusions did not produce a clearly identifiable fluorescence signal. For 10 ORFs we constructed 5'-GFP fusions that were expressed from the regulatable GAL1 promoter. In all cases we observed GFP fluorescence upon induction but the localization of the fusion proteins remained difficult to determine. GFP-Ynl020c and GFP-Ynl034w strains grew only poorly on galactose, indicating a toxic effect of the overexpressed fusion proteins. In summary, we obtained a discernible GFP localization pattern in five of 20 strains investigated (25%). A deletion phenotype was observed in seven of 21 (33%) and an overexpression phenotype in two of 10 (20%) cases. Copyright (C) 2000 John Wiley & Sons, Ltd.
引用
下载
收藏
页码:241 / 253
页数:13
相关论文
共 50 条
  • [41] Evolutionary divergence of novel open reading frames in cichlids speciation
    Shraddha Puntambekar
    Rachel Newhouse
    Jaime San-Miguel
    Ruchi Chauhan
    Grégoire Vernaz
    Thomas Willis
    Matthew T. Wayland
    Yagnesh Umrania
    Eric A. Miska
    Sudhakaran Prabakaran
    Scientific Reports, 10
  • [42] Evaluating proteome allocation of Saccharomyces cerevisiae phenotypes with resource balance analysis
    Dinh, Hoang, V
    Maranas, Costas D.
    METABOLIC ENGINEERING, 2023, 77 : 242 - 255
  • [43] Sequencing a cosmid clone of Saccharomyces cerevisiae chromosome XIV reveals 12 new open reading frames (ORFs) and an ancient duplication of six ORFs
    Pohlmann, R
    Philippsen, P
    YEAST, 1996, 12 (04) : 391 - 402
  • [44] Automated Yeast Mating Protocol Using Open Reading Frames from Saccharomyces cerevisiae Genome to Improve Yeast Strains for Cellulosic Ethanol Production
    Hughes, Stephen R.
    Hector, Ronald E.
    Rich, Joseph O.
    Qureshi, Nasib
    Bischoff, Kenneth M.
    Dien, Bruce S.
    Saha, Badal C.
    Liu, Siqing
    Cox, Elby J.
    Jackson, John S., Jr.
    Sterner, David E.
    Butt, Tauseef R.
    LaBaer, Joshua
    Cotta, Michael A.
    JALA, 2009, 14 (04): : 190 - 199
  • [45] Functional genomics of genes with small open reading frames (sORFs) in S-cerevisiae
    Kastenmayer, JP
    Ni, L
    Chu, A
    Kitchen, LE
    Au, WC
    Yang, H
    Carter, CD
    Wheeler, D
    Davis, RW
    Boeke, JD
    Snyder, MA
    Basrai, MA
    GENOME RESEARCH, 2006, 16 (03) : 365 - 373
  • [46] Functional analysis of 150 deletion mutants in Saccharomyces cerevisiae by a systematic approach
    K.-D. Entian
    T. Schuster
    J. H. Hegemann
    D. Becher
    H. Feldmann
    U. Güldener
    R. Götz
    M. Hansen
    C. P. Hollenberg
    G. Jansen
    W. Kramer
    S. Klein
    P. Kötter
    J. Kricke
    H. Launhardt
    G. Mannhaupt
    A. Maierl
    P. Meyer
    W. Mewes
    T. Munder
    R. K. Niedenthal
    M. Ramezani Rad
    A. Röhmer
    A. Römer
    M. Rose
    B. Schäfer
    M.-L. Siegler
    J. Vetter
    N. Wilhelm
    K. Wolf
    F. K. Zimmermann
    A. Zollner
    A. Hinnen
    Molecular and General Genetics MGG, 1999, 262 : 683 - 702
  • [47] Parallel analysis of deletion mutants in Saccharomyces cerevisiae under zinc deficiency
    Khan, F.
    Hogstrand, C.
    Jo, W.
    Loguinov, A.
    Wintz, H.
    Vulpe, C.
    COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 2007, 146 (04): : S196 - S197
  • [48] Functional analysis of 150 deletion mutants in Saccharomyces cerevisiae by a systematic approach
    Entian, KD
    Schuster, T
    Hegemann, JH
    Becher, D
    Feldmann, H
    Güldener, U
    Götz, R
    Hansen, M
    Hollenberg, CP
    Jansen, G
    Kramer, W
    Klein, S
    Kötter, P
    Kricke, J
    Launhardt, H
    Mannhaupt, G
    Maierl, A
    Meyer, P
    Mewes, W
    Munder, T
    Niedenthal, RK
    Rad, MR
    Röhmer, A
    Römer, A
    Rose, M
    Schäfer, B
    Siegler, ML
    Vetter, J
    Wilhelm, N
    Wolf, K
    Zimmermann, FK
    Zollner, A
    Hinnen, A
    MOLECULAR AND GENERAL GENETICS, 1999, 262 (4-5): : 683 - 702
  • [49] Transcriptome Analysis of Three Saccharomyces cerevisiae Deletion Strains Altered in Mannosylphosphorylation
    Teixido, Francisco
    Corbacho, Isaac
    Velazquez, Rocio
    Olivero, Isabel
    Hernandez, Luis M.
    GLYCOBIOLOGY, 2010, 20 (11) : 1504 - 1504
  • [50] Analysis of plasmid deletion induced by ionizing radiation in yeast Saccharomyces cerevisiae
    Yatsevich, E.
    Stepanova, A.
    Sprincova, A.
    Koltovaya, N.
    NUCLEAR PHYSICS METHODS AND ACCELERATORS IN BIOLOGY AND MEDICINE, 2007, 958 : 302 - 303