Background Tumor necrosis factor (TNF)- inhibition was shown to reduce ischemia/reperfusion injury (IRI) after intestinal transplantation (ITX). We studied the effects of different TNF inhibitors on acute IRI and long-term inflammatory responses in experimental ITX. Methods Orthotopic ITX was performed in an isogenic ischemia/reperfusion model in Lewis rats. The TNF inhibition groups received infliximab post-reperfusion; etanercept pre-reperfusion and at postoperative days (POD) 1, 3, 5, and 7; or pentoxifylline pre-reperfusion and at POD 1 to 5. Tissue samples were taken from proximal and distal graft sections and mesenteric lymph nodes at 20 min, 12 hr, 7 day, and 6 months post-reperfusion for histopathology, immunohistology, terminal deoxyribosyl transferase-mediated dUTP nick-end labeling (TUNEL) assay, and real-time RT-PCR. Lung sections were stained for the myeloperoxidase assay. Results TNF inhibitors decreased inflammatory changes after IRI in all treatment groups. Infliximab significantly improved 7-day survival and reduced the histological and immunohistochemical signs of IRI, the numbers of graft-infiltrating T cells and ED1(+) monocytes and macrophages, and pulmonary neutrophil infiltration, and also enhanced the accumulation of cytoprotective markers. Graft injury was more prominent in the distal graft than in the proximal graft in all groups, regardless of TNF inhibition. Conclusion Infliximab significantly reduced both acute IRI and, as with other TNF inhibitors, long-term inflammatory responses after rat ITX. TNF inhibition may help diminish chronic inflammatory long-term effects and avoid chronic allograft enteropathy.