PCR optimization and troubleshooting, with special reference to the amplification of ribosomal DNA in lichenized fungi

被引:0
|
作者
Ekman, S [1 ]
机构
[1] Univ Bergen, Dept Bot, N-5007 Bergen, Norway
来源
LICHENOLOGIST | 1999年 / 31卷
关键词
D O I
暂无
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Factors affecting the outcome of a PCR is discussed. Nested PCR is described and a protocol that has been shown to work well for the amplification of ribosomal genes in ascomycetes is described. It is claimed that DNA extracts of lichenized fungi, contrary to many other organism groups, are: often contaminated by other fungi: This poses a problem due to the preferential amplification of short intron-lacking sequences over longer, intron-containing ones, particularly when extension time is limited. A simple protocol for optimizing and troubleshooting PCRs is presented. (C) 1999 The British Lichen Society.
引用
收藏
页码:517 / 531
页数:15
相关论文
共 50 条
  • [21] RAPID IDENTIFICATION OF STREPTOCOCCUS-PNEUMONIAE BY PCR AMPLIFICATION OF RIBOSOMAL DNA SPACER REGION
    SARUTA, K
    MATSUNAGA, T
    HOSHINA, S
    KONO, M
    KITAHARA, S
    KANEMOTO, S
    SAKAI, O
    MACHIDA, K
    FEMS MICROBIOLOGY LETTERS, 1995, 132 (1-2) : 165 - 170
  • [22] OPTIMIZATION OF COUPLED PCR AMPLIFICATION AND CYCLE SEQUENCING OF CLONED AND GENOMIC DNA
    REYNOLDS, TR
    ULIANA, SRB
    FLOETERWINTER, LM
    BUCK, GA
    BIOTECHNIQUES, 1993, 15 (03) : 462 - &
  • [23] Optimization of DNA Extraction from Individual Sand Flies for PCR Amplification
    Caligiuri, Lorena G.
    Sandoval, Adolfo E.
    Miranda, Jose C.
    Pessoa, Felipe A.
    Santini, Maria S.
    Salomon, Oscar D.
    Secundino, Nagila F. C.
    McCarthy, Christina B.
    METHODS AND PROTOCOLS, 2019, 2 (02) : 1 - 15
  • [24] A coral-specific primer for PCR amplification of the internal transcribed spacer region in ribosomal DNA
    Takabayashi, M
    Carter, DA
    Loh, WKW
    Hoegh-Guldberg, O
    MOLECULAR ECOLOGY, 1998, 7 (07) : 928 - 930
  • [25] Enhanced DNA extraction and PCR amplification of SSU ribosomal genes from crustose coralline algae
    Rodrigo Vidal
    Isabel Meneses
    Macarena Smith
    Journal of Applied Phycology, 2002, 14 : 223 - 227
  • [26] Enhanced DNA extraction and PCR amplification of SSU ribosomal genes from crustose coralline algae
    Vidal, R
    Meneses, I
    Smith, M
    JOURNAL OF APPLIED PHYCOLOGY, 2002, 14 (03) : 223 - 227
  • [27] DETECTION OF LENGTH HETEROGENEITY IN THE RIBOSOMAL DNA OF PYTHIUM-ULTIMUM BY PCR AMPLIFICATION OF THE INTERGENIC REGION
    BUCHKO, J
    KLASSEN, GR
    CURRENT GENETICS, 1990, 18 (03) : 203 - 205
  • [28] PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes
    Zoller, S
    Scheidegger, C
    Sperisen, C
    LICHENOLOGIST, 1999, 31 : 511 - 516
  • [29] Amplification of ribosomal DNA of Anoplocephalidae:: Anoplocephala perfoliata diagnosis by PCR as a possible alternative to coprological methods
    Drogemuller, M
    Beelitz, P
    Pfister, K
    Schnieder, T
    von Samson-Himmelstjerna, G
    VETERINARY PARASITOLOGY, 2004, 124 (3-4) : 205 - 215
  • [30] DNA Analysis Using an Integrated Microchip for Multiplex PCR Amplification and Electrophoresis for Reference Samples
    Le Roux, Delphine
    Root, Brian E.
    Reedy, Carmen R.
    Hickey, Jeffrey A.
    Scott, Orion N.
    Bienvenue, Joan M.
    Landers, James P.
    Chassagne, Luc
    de Mazancourt, Philippe
    ANALYTICAL CHEMISTRY, 2014, 86 (16) : 8192 - 8199