Computational Prediction of Protein-Peptide Binding

被引:0
|
作者
Antes, Iris [1 ]
Glaser, Manuel [1 ]
Patronov, Atanas [1 ]
机构
[1] Tech Univ Munich, Freising Weihenstephan, Germany
关键词
D O I
10.1016/j.bpj.2013.11.3582
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
引用
收藏
页码:647A / 647A
页数:1
相关论文
共 50 条
  • [31] A deep attention model for wide-genome protein-peptide binding affinity prediction at a sequence level
    Sun, Xiaohan
    Wu, Zhixiang
    Su, Jingjie
    Li, Chunhua
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2024, 276
  • [32] Efficient molecular dynamics simulations of protein-peptide binding kinetics
    Zwier, Matthew C.
    Kaus, Joseph W.
    Bhatt, Divesh
    Adelman, Joshua L.
    Grabe, Michael
    Zuckerman, Daniel M.
    Chong, Lillian T.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 244
  • [33] Protein-peptide interaction studies demonstrate the versatility of calmodulin target protein binding
    Ishida, Hiroaki
    Vogel, Hans J.
    PROTEIN AND PEPTIDE LETTERS, 2006, 13 (05): : 455 - 465
  • [34] Application of RotaSVM for HLA Class II Protein-Peptide Interaction Prediction
    Bhowmick, Shib Sankar
    Saha, Indrajit
    Mazzocco, Giovanni
    Maulik, Ujjwal
    Rato, Luis
    Bhattacharjee, Debotosh
    Plewczynski, Dariusz
    BIOINFORMATICS 2014: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOINFORMATICS MODELS, METHODS AND ALGORITHMS, 2014, : 178 - 185
  • [35] Predicting protein-peptide binding sites with a deep convolutional neural network
    Wardah, Wafaa
    Dehzangi, Abdollah
    Taherzadeh, Ghazaleh
    Rashid, Mahmood A.
    Khan, M. G. M.
    Tsunoda, Tatsuhiko
    Sharma, Alok
    JOURNAL OF THEORETICAL BIOLOGY, 2020, 496
  • [36] All-Atom Monte Carlo Approach to Protein-Peptide Binding
    Staneva, Iskra
    Wallin, Stefan
    JOURNAL OF MOLECULAR BIOLOGY, 2009, 393 (05) : 1118 - 1128
  • [37] Direct observation of protein-peptide folding and binding in the formation of ribonuclease S
    Lee, Yumin
    Ashwood, Brennan
    Wu, Yiheng
    Dhayalan, Balamurugan
    Gagnon, Isabelle
    Sosnick, Tobin R.
    Tokmakoff, Andrei
    BIOPHYSICAL JOURNAL, 2024, 123 (03) : 461A - 462A
  • [38] Machine Learning in Quantitative Protein-peptide Affinity Prediction: Implications for Therapeutic Peptide Design
    Li, Zhongyan
    Miao, Qingqing
    Yan, Fugang
    Meng, Yang
    Zhou, Pcng
    CURRENT DRUG METABOLISM, 2019, 20 (03) : 170 - 176
  • [39] Interaction of Nanomaterials with Protein-Peptide
    Hazarika, Zaved
    Saikia, Surovi
    Jha, Anupam Nath
    CURRENT PROTEIN & PEPTIDE SCIENCE, 2022, 23 (08) : 548 - 562
  • [40] SPPPred: Sequence-Based Protein-Peptide Binding Residue Prediction Using Genetic Programming and Ensemble Learning
    Shafiee, Shima
    Fathi, Abdolhossein
    Taherzadeh, Ghazaleh
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 20 (03) : 2029 - 2040