Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files

被引：68
|
作者：
Li, Yuanyue [1 ]
Zhong, Chuan-Qi [1 ]
Xu, Xiaozheng [1 ]
Cai, Shaowei [1 ]
Wu, Xiurong [1 ]
Zhang, Yingying [1 ]
Chen, Jinan [1 ]
Shi, Jianghong [2 ]
Lin, Shengcai [1 ]
Han, Jiahuai [1 ]
机构：
[1] Xiamen Univ, Sch Life Sci, Innovat Ctr Cell Signaling Network, State Key Lab Cellular Stress Biol, Xiamen, Fujian, Peoples R China
[2] Xiamen Univ, Sch Informat Sci & Engn, Xiamen, Fujian, Peoples R China
来源：
NATURE METHODS | 2015年 / 12卷 / 12期
关键词：
PROTEOMICS;
D O I：
10.1038/nmeth.3593
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
引用
收藏
页码：1105 / 1106
页数：2
相关论文
共 50 条
  • [31] Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry
    Mueller, Franze
    Kolbowski, Lars
    Bernhardt, Oliver M.
    Reiter, Lukas
    Rappsilber, Juri
    MOLECULAR & CELLULAR PROTEOMICS, 2019, 18 (04) : 786 - 795
  • [32] Simultaneous Quantification of Viral Antigen Expression Kinetics Using Data-Independent (DIA) Mass Spectrometry
    Croft, Nathan P.
    de Verteuil, Danielle A.
    Smith, Stewart A.
    Wong, Yik Chun
    Schittenhelm, Ralf B.
    Tscharke, David C.
    Purcell, Anthony W.
    MOLECULAR & CELLULAR PROTEOMICS, 2015, 14 (05) : 1361 - 1372
  • [33] Quantitative Chemoproteomic Profiling with Data-Independent Acquisition-Based Mass Spectrometry
    Yang, Fan
    Jia, Guogeng
    Guo, Jiuzhou
    Liu, Yuan
    Wang, Chu
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2022, 144 (02) : 901 - 911
  • [34] Advancing untargeted metabolomics using data-independent acquisition mass spectrometry technology
    Wang, Ruohong
    Yin, Yandong
    Zhu, Zheng-Jiang
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2019, 411 (19) : 4349 - 4357
  • [35] Data-Independent Acquisition-Based Mass Spectrometry (DIA-MS) for Quantitative Analysis of Intact N-Linked Glycopeptides
    Dong, Mingming
    Lih, Tung-Shing Mamie
    Ao, Minghui
    Hu, Yingwei
    Chen, Shao-Yung
    Eguez, Rodrigo Vargas
    Zhang, Hui
    ANALYTICAL CHEMISTRY, 2021, 93 (41) : 13774 - 13782
  • [36] Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data
    Heil, Lilian R.
    Fondrie, William E.
    McGann, Christopher D.
    Federation, Alexander J.
    Noble, William S.
    MacCoss, Michael J.
    Keich, Uri
    JOURNAL OF PROTEOME RESEARCH, 2022, 21 (06) : 1382 - 1391
  • [37] Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology
    Frantisek Filandr
    Vladimir Sarpe
    Shaunak Raval
    D. Alex Crowder
    Morgan F. Khan
    Pauline Douglas
    Stephen Coales
    Rosa Viner
    Aleem Syed
    John A. Tainer
    Susan P. Lees-Miller
    David C. Schriemer
    Nature Communications, 15
  • [38] Integration of data-independent acquisition (DIA) with co-fractionation mass spectrometry (CF-MS) to enhance interactome mapping capabilities
    Hay, Brenna N.
    Akinlaja, Mopelola O.
    Baker, Teesha C.
    Houfani, Aicha Asma
    Stacey, R. Greg
    Foster, Leonard J.
    PROTEOMICS, 2023, 23 (21-22)
  • [39] PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data
    Ting, Ying S.
    Egertson, Jarrett D.
    Bollinger, James G.
    Searle, Brian C.
    Payne, Samuel H.
    Noble, William Stafford
    MacCoss, Michael J.
    NATURE METHODS, 2017, 14 (09) : 903 - +
  • [40] Data-independent acquisition (DIA) mass spectrometry reveals related proteins involved in the occurrence of early intestinal-type gastric cancer
    Zhang, Liangshun
    Xu, Feng
    Lu, Hongna
    Dong, Xianwen
    Gao, Zhiqiang
    Zhao, Qiaosu
    Weng, Ting
    Li, Hong
    Ye, Hua
    MEDICAL ONCOLOGY, 2023, 41 (01)
12345