A genome-wide and nonredundant mouse transcription factor database

被引：105
|
作者：
Kanamori, M
Konno, H
Osato, N
Kawai, J
Hayashizaki, Y
Suzuki, H
机构：
[1] RIKEN, GSC, Lab Genome Explorat Res Grp, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan
[2] RIKEN, Genome Sci Lab, Wako, Saitama 3510198, Japan
来源：
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS | 2004年 / 322卷 / 03期
关键词：
mouse; transcription factor; database; gene ontology; LocusLink; annotation; cDNA clones;
D O I：
10.1016/j.bbrc.2004.07.179
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
Here we describe the development of a genome-wide and nonredundant mouse transcription factor database and its viewer (http://genome.gsc.riken.jp/TFdb/). We systematically selected transcription factors with DNA-binding properties and their regulators on the basis of their LocusLink and Gene Ontology annotations. We also incorporated into our database information regarding the corresponding available cDNA clones and their structural properties. Because of these features, our database is unique and may provide useful information for systematic genome-wide studies of transcriptional regulation. (C) 2004 Elsevier Inc. All rights reserved.
引用
收藏
页码：787 / 793
页数：7
相关论文
共 50 条
  • [41] GENOME-WIDE ANALYSIS OF TRIHELIX TRANSCRIPTION FACTOR GENE FAMILY IN Arabidopsis thaliana
    Yasmeen, Erum
    Riaz, Muhammad
    Sultan, Shaiq
    Azeem, Furrukh
    Abbas, Amjad
    Riaz, Kashif
    Ali, Muhammad Amjad
    PAKISTAN JOURNAL OF AGRICULTURAL SCIENCES, 2016, 53 (02): : 439 - 448
  • [42] Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE
    Foat, Barrett C.
    Morozov, Alexandre V.
    Bussemaker, Harmen J.
    BIOINFORMATICS, 2006, 22 (14) : E141 - E149
  • [43] Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Pineapple
    Qing He
    Yanhui Liu
    Man Zhang
    Mengyan Bai
    S. V. G. N. Priyadarshani
    Mengnan Chai
    Fangqian Chen
    Youmei Huang
    Liping Liu
    Hanyang Cai
    Yuan Qin
    Tropical Plant Biology, 2019, 12 : 255 - 267
  • [44] Genome-wide analysis of transcription factor binding sites and their characteristic DNA structures
    Zhiming Dai
    Dongliang Guo
    Xianhua Dai
    Yuanyan Xiong
    BMC Genomics, 16
  • [45] Genome-wide characterization of nuclear factor Y transcription factors in Fagopyrum tataricum
    Zhang, Ling
    Yung, Wai-Shing
    Sun, Wei
    Li, Man-Wah
    Huang, Mingkun
    PHYSIOLOGIA PLANTARUM, 2022, 174 (02)
  • [46] REPA: Applying Pathway Analysis to Genome-Wide Transcription Factor Binding Data
    Patra, Pranjal
    Izawa, Tatsuo
    Pena-Castillo, Lourdes
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 15 (04) : 1270 - 1283
  • [47] Defining the CREB regulon: A genome-wide analysis of transcription factor regulatory regions
    Impey, S
    McCorkle, SR
    Cha-Molstad, H
    Dwyer, JM
    Yochum, GS
    Boss, JM
    McWeeney, S
    Dunn, JJ
    Mandel, G
    Goodman, RH
    CELL, 2004, 119 (07) : 1041 - 1054
  • [48] Genome-wide prediction of transcription factor binding sites using an integrated model
    Won, Kyoung-Jae
    Ren, Bing
    Wang, Wei
    GENOME BIOLOGY, 2010, 11 (01):
  • [49] GWIDD: Genome-wide protein docking database
    Kundrotas, Petras J.
    Zhu, Zhengwei
    Vakser, Ilya A.
    NUCLEIC ACIDS RESEARCH, 2010, 38 : D513 - D517
  • [50] Structural and genome-wide studies of gene transcription
    Cramer, P.
    FEBS JOURNAL, 2014, 281 : 44 - 44
12345