A signature of six-hypoxia-related genes to evaluate the tumor immune microenvironment and predict prognosis in gastric cancer

被引:4
|
作者
Zhou, Kena [1 ]
Cai, Congbo [2 ]
Ding, Guanjun [3 ]
He, Yi [1 ]
Hu, Di [1 ]
机构
[1] Ningbo 9 Hosp, Gastroenterol Dept, 68 Xiangbei Rd, Ningbo 315000, Zhejiang, Peoples R China
[2] Yinzhou 2 Hosp, Emergency Dept, Ningbo 315000, Zhejiang, Peoples R China
[3] Ningbo 9 Hosp, Gen Surg Dept, Ningbo 315000, Zhejiang, Peoples R China
关键词
Hypoxia; Gastric cancer; TME; Risk model; Immune response; HYPOXIA; TISSUE;
D O I
10.1186/s12920-022-01411-9
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
BackgroundHypoxia will trigger a series of immunosuppressive process in tumor microenvironment, leading to the progression in gastric cancer (GC). This research aims to establish a prognostic model made up of hypoxia-risk-related genes in GC.MethodsHypoxic genes were outlined via the protein-protein interaction network. And a prognostic model was developed using univariate cox analysis and lasso regression from data in TCGA. Two independent queues of GEO were used for validation.ResultsWe set up a hypoxic model presented as an independent prognostic factor for GC. And a nomogram combined this model with clinical features can predict OS with great performance. Furthermore, DNA methylation, IHC and cell line analyses validated the expression of hypoxic genes in GC.ConclusionsIn summary, we proposed and verified a hypoxia-risk-related model, which could reflect the immune microenvironment and predict prognosis in GC.
引用
收藏
页数:12
相关论文
共 50 条
  • [11] Prognosis and tumor immune microenvironment of patients with gastric cancer by a novel senescence-related signature
    Zhang, Guanglin
    Dong, Kechen
    Liu, Jianping
    Zhou, Wei
    MEDICINE, 2022, 101 (40) : E30927
  • [12] Identification of Hypoxia-Associated Signature in Colon Cancer to Assess Tumor Immune Microenvironment and Predict Prognosis Based on 14 Hypoxia-Associated Genes
    Chen, Peng
    Li, Zhongxin
    Liang, Yulong
    Wei, Ming
    Jiang, Haibo
    Chen, Shihao
    Zhao, Zengren
    INTERNATIONAL JOURNAL OF GENERAL MEDICINE, 2023, 16 : 2503 - 2518
  • [13] Glycolysis-related genes predict prognosis and indicate immune microenvironment features in gastric cancer
    Xu, Lu
    Liu, Jin
    An, Yuanqing
    Zhou, Lei
    Sun, Hui
    Xu, Zhen
    Wang, Deqiang
    Liang, Zhanwen
    Xu, Caihua
    Wang, Bingyi
    Li, Wei
    BMC CANCER, 2024, 24 (01)
  • [14] Membrane Trafficking-Related Genes Predict Tumor Immune Microenvironment and Prognosis in Colorectal Cancer
    Zhou Ding
    Lu Han
    Qun Zhang
    Jing Hu
    Li Li
    Xiaoping Qian
    Biochemical Genetics, 2024, 62 : 1413 - 1427
  • [15] Membrane Trafficking-Related Genes Predict Tumor Immune Microenvironment and Prognosis in Colorectal Cancer
    Ding, Zhou
    Han, Lu
    Zhang, Qun
    Hu, Jing
    Li, Li
    Qian, Xiaoping
    BIOCHEMICAL GENETICS, 2024, 62 (02) : 1413 - 1427
  • [16] Identification of a Hypoxia-Related Signature for Predicting Prognosis and the Immune Microenvironment in Bladder Cancer
    Jiang, Minxiao
    Ren, Liangliang
    Chen, Yuanlei
    Wang, Huan
    Wu, Haiyang
    Cheng, Sheng
    Li, Gonghui
    Yu, Shicheng
    FRONTIERS IN MOLECULAR BIOSCIENCES, 2021, 8
  • [17] Construction of a ferroptosis and hypoxia-related gene signature in cervical cancer to assess tumour immune microenvironment and predict prognosis
    Wu, Haiyan
    Fan, Yayun
    Bao, Yuanyuan
    Zhou, Qing
    Xu, Lei
    Xu, Yao
    JOURNAL OF OBSTETRICS AND GYNAECOLOGY, 2024, 44 (01)
  • [18] A Hypoxia Signature for Predicting Prognosis and Tumor Immune Microenvironment in Adrenocortical Carcinoma
    Chen, Xi
    Yan, Lijun
    Lu, Yu
    Jiang, Feng
    Zeng, Ni
    Yang, Shufang
    Ma, Xianghua
    JOURNAL OF ONCOLOGY, 2021, 2021
  • [19] Disulfidptosis signature predicts immune microenvironment and prognosis of gastric cancer
    Liu, Zitao
    Sun, Liang
    Zhu, Wenjie
    Zhu, Jinfeng
    Wu, Changlei
    Peng, Xingyu
    Tian, Huakai
    Huang, Chao
    Zhu, Zhengming
    BIOLOGY DIRECT, 2024, 19 (01)
  • [20] Identification of prognostic hypoxia-related genes signature on the tumor microenvironment in esophageal cancer
    Tan, Linlin
    Cheng, Dingzhuo
    Wen, Jianbo
    Huang, Kefeng
    Zhang, Qin
    MATHEMATICAL BIOSCIENCES AND ENGINEERING, 2021, 18 (06) : 7743 - 7758