Geometric and Electronic Structure Contributions to Function in Non-heme Iron Enzymes

被引:138
|
作者
Solomon, Edward I. [1 ]
Light, Kenneth M. [1 ]
Liu, Lei V. [1 ]
Srnec, Martin [1 ]
Wong, Shaun D. [1 ]
机构
[1] Stanford Univ, Dept Chem, Stanford, CA 94305 USA
基金
美国国家卫生研究院;
关键词
HYDROGEN-ATOM ABSTRACTION; ACTIVATED BLEOMYCIN; HIGH-SPIN; COMPLEXES; MECHANISM; SPECTROSCOPY; ELUCIDATION; HALOGENASE; OXYGEN; HEME;
D O I
10.1021/ar400149m
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Mononuclear non-heme Fe (NHFe) enzymes play key roles in DNA repair, the biosynthesis of antibiotics, the response to hypoxia, cancer therapy, and many other biological processes. These enzymes catalyze a diverse range of oxidation reactions, including hydroxylation, halogenation, ring closure, desaturation, and electrophilic aromatic substitution (EAS). Most of these enzymes use an Fe-II site to activate dioxygen, but traditional spectroscopic methods have not allowed researchers to insightfully probe these ferrous active sites. We have developed a methodology that provides detailed geometric and electronic structure insights into these NHFeII active sites. Using these data, we have defined a general mechanistic strategy that many of these enzymes use: they control O-2 activation (and limit autoxidation and self-hydroxylation) by allowing Fe-II coordination unsaturation only in the presence of cosubstrates. Depending on the type of enzyme, O-2 activation either involves a 2e(-) reduced Fe-III-OOH intermediate or a 4e(-) reduced Fe-IV=O intermediate. Nuclear resonance vibrational spectroscopy (NRVS) has provided the geometric structure of these intermediates, and magnetic circular dichroism (MCD) has defined the frontier molecular orbitals (FMOs), the electronic structure that controls reactivity. This Account emphasizes that experimental spectroscopy is critical in evaluating the results of electronic structure calculations. Therefore these data are a key mechanistic bridge between structure and reactivity. For the Fe-III-OOH intermediates, the anticancer drug activated bleomycin (BLM) acts as the non-heme Fe analog of compound 0 in heme (e.g., P450) chemistry. However BLM shows different reactivity: the low-spin (LS) Fe-III-OOH can directly abstract a H atom from DNA. The LS and high-spin (HS) Fe-III-OOHs have fundamentally different transition states. The IS transition state goes through a hydroxyl radical, but the HS transition state is activated for EAS without O-O deavage. This activation is important in one class of NHFe enzymes that utilizes a HS Fe-III-OOH intermediate in dioxygenation. For Fe-IV=O intermediates, the IS form has a pi-type FMO activated for attack perpendicular to the Fe-O bond. However, the HS form (present in the NHFe enzymes) has a pi FMO activated perpendicular to the Fe-O bond and a sigma FMO positioned along the Fe-O bond. For the NHFe enzymes, the presence of pi rand sigma FMOs enables enzymatic control in determining the type of reactivity: EAS or H-atom extraction for one substrate with different enzymes and halogenation or hydroxylation for one enzyme with different substrates.
引用
收藏
页码:2725 / 2739
页数:15
相关论文
共 50 条
  • [21] Spectroscopic and theoretical studies of fully-reduced non-heme iron enzymes: structure function correlations
    Yang, YS
    Broadwater, JA
    Fox, BG
    Solomon, EI
    JOURNAL OF INORGANIC BIOCHEMISTRY, 1999, 74 (1-4) : 344 - 344
  • [23] Spectroscopic and electronic structure studies of aromatic electrophilic attack and hydrogen-atom abstraction by non-heme iron enzymes
    Neidig, Michael L.
    Decker, Andrea
    Choroba, Oliver W.
    Huang, Fanglu
    Kavana, Michael
    Moran, Graham R.
    Spencer, Jonathan B.
    Solomon, Edward I.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (35) : 12966 - 12973
  • [24] EXAFS studies of mononuclear and dinuclear non-heme iron enzymes
    Quaroni, L
    Brazeau, BJ
    Rocklin, AM
    Popescu, VC
    Lipscomb, JD
    Que, L
    JOURNAL OF INORGANIC BIOCHEMISTRY, 2001, 86 (01) : 387 - 387
  • [25] Heterodimeric Non-heme Iron Enzymes in Fungal Meroterpenoid Biosynthesis
    Li, Xinyang
    Awakawa, Takayoshi
    Mori, Takahiro
    Ling, Meiqi
    Hu, Dan
    Wu, Bin
    Abe, Ikuro
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2021, 143 (50) : 21425 - 21432
  • [26] Divergent non-heme iron enzymes in the nogalamycin biosynthetic pathway
    Siitonen, Vilja
    Selvaraj, Brinda
    Niiranen, Laila
    Lindqvist, Ylva
    Schneider, Gunter
    Metsa-Ketela, Mikko
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (19) : 5251 - 5256
  • [27] Theoretical studies of oxygen activation by non-heme iron enzymes
    Bassan, A
    Blomberg, MRA
    Siegbahn, PEM
    JOURNAL OF INORGANIC BIOCHEMISTRY, 2003, 96 (01) : 62 - 62
  • [28] O2 Activation by Non-Heme Iron Enzymes
    Solomon, Edward I.
    Goudarzi, Serra
    Sutherlin, Kyle D.
    BIOCHEMISTRY, 2016, 55 (46) : 6363 - 6374
  • [29] Structure/function correlations over binuclear non-heme iron active sites
    Edward I. Solomon
    Kiyoung Park
    JBIC Journal of Biological Inorganic Chemistry, 2016, 21 : 575 - 588
  • [30] Structure/function correlations over binuclear non-heme iron active sites
    Solomon, Edward I.
    Park, Kiyoung
    JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2016, 21 (5-6): : 575 - 588