Draft genome sequence of Cercospora canescens: a leaf spot causing pathogen

被引:0
|
作者
Chand, Ramesh [1 ]
Pal, Chhattar [1 ]
Singh, Vineeta [1 ]
Kumar, Manoj [1 ,2 ]
Singh, Vinay Kumar [3 ]
Chowdappa, Pallem [4 ]
机构
[1] Banaras Hindu Univ, Inst Agr Sci, Dept Mycol & Plant Pathol, Varanasi 221005, Uttar Pradesh, India
[2] Banaras Hindu Univ, Fac Sci, Dept Biochem, Varanasi 221005, Uttar Pradesh, India
[3] Banaras Hindu Univ, Sch Biotechnol, Ctr Bioinformat, Varanasi 221005, Uttar Pradesh, India
[4] ICAR Cent Plantat Crops Res Inst, Kudlu 671124, India
来源
CURRENT SCIENCE | 2015年 / 109卷 / 11期
关键词
Cercospora canescens; functional annotation; gene prediction; sequencing and assembly; Vigna radiata; MAGNAPORTHE-GRISEA; ZEAE-MAYDIS; SSR-MARKERS; MAP KINASE; GENE; PLANT; GROWTH; BLAST; GENERATION; RESISTANT;
D O I
暂无
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cercospora canescens (Ellis and Martin) is a hemibiotrophic pathogen causing leaf spot disease on mungbean (Vigna radiata L). Genome sequence (similar to 33.97 Mb) assembled in 8239 contigs with 10627 protein coding genes. A total of 2842 proteins were identified as homologous of 223 predicted and 7562 putative un-characterized involved in biological processes, molecular functions. The identified proteins are mainly involved in infection process used to compromise nutrients or destroy host tissues, the gycosidases, transposases and cytochrome P450s genes codes to signal transduction, cell wall breakdown, transporters, host stomata perception, adhesion, polyketide synthase and cercosporin. A total of 528 simple sequence repeats were also identified from the genome sequence assembly of C. canescens. This study provides insights into pathogenic mechanism and a better understanding of virulence differentiation of C. canescens. It will also help in identification of similarity and differences in regions among the genomes of different species of Cercospora.
引用
收藏
页码:2103 / 2110
页数:8
相关论文
共 50 条
  • [31] Management Strategies using Phytoextracts and Fungicides Against Cercospora Leaf Spot of Mungbean Incited by Cercospora canescens under in vitro and in vivo Conditions
    Kumar, Naresh
    Singh, Mahabeer
    Lakhran, Lalita
    Prajapati, Satyadev
    Maurya, Shivam
    LEGUME RESEARCH, 2023, 46 (09) : 1240 - 1246
  • [32] Phylogenetic analysis of the pathogen causing eggplant brown leaf spot
    Misawa, Tomoo
    Iwadate, Yasuya
    Kurose, Daisuke
    JOURNAL OF GENERAL PLANT PATHOLOGY, 2021, 87 (02) : 123 - 126
  • [33] Phylogenetic analysis of the pathogen causing eggplant brown leaf spot
    Tomoo Misawa
    Yasuya Iwadate
    Daisuke Kurose
    Journal of General Plant Pathology, 2021, 87 : 123 - 126
  • [34] Cercospora beticola ecology and the epidemiology of Cercospora leaf spot
    Franc, G. D.
    PHYTOPATHOLOGY, 2006, 96 (06) : S140 - S140
  • [35] Evaluation of Cercospora leaf spot and postharvest rot pathogen impacts on sugar beet storage
    Hendershot, C.
    Willbur, J. F.
    Bloomingdale, C.
    Hanson, L. E.
    Corder, H.
    Goodwill, T.
    Ruth, S.
    PHYTOPATHOLOGY, 2023, 113 (09)
  • [36] GWAS reveals a rapidly evolving candidate avirulence effector in the Cercospora leaf spot pathogen
    Chen, Chen
    Keunecke, Harald
    Bemm, Felix
    Gyetvai, Gabor
    Neu, Enzo
    Kopisch-Obuch, Friedrich J.
    Mcdonald, Bruce A.
    Stapley, Jessica
    MOLECULAR PLANT PATHOLOGY, 2024, 25 (01)
  • [37] Evaluation of Cercospora leaf spot and postharvest rot pathogen impacts on sugar beet storage
    Hendershot, C.
    Corder, H.
    Bloomingdale, C.
    Pincumbe, C.
    Goodwill, T.
    Ruth, S.
    Beaudry, R.
    Hanson, L. E.
    Willbur, J. F.
    PHYTOPATHOLOGY, 2022, 112 (11) : 151 - 151
  • [38] Draft nuclear genome sequence for the plant pathogen, Ceratocystis fimbriata
    P. Markus Wilken
    Emma T. Steenkamp
    Michael J. Wingfield
    Z. Wilhelm de Beer
    Brenda D. Wingfield
    IMA Fungus, 2013, 4 : 357 - 358
  • [39] Draft nuclear genome sequence for the plant pathogen, Ceratocystis fimbriata
    Wilken, P. Markus
    Steenkamp, Emma T.
    Wingfield, Michael J.
    de Beer, Z. Wilhelm
    Wingfield, Brenda D.
    IMA FUNGUS, 2013, 4 (02) : 357 - 358
  • [40] Draft Genome Sequence of the Strawberry Anthracnose Pathogen Colletotrichum fructicola
    Armitage, Andrew D.
    Nellist, Charlotte F.
    Bates, Helen J.
    Zhang, Liqing
    Zou, Xiaohua
    Gao, Qing-Hua
    Harrison, Richard J.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (12):