Overview of Genomic Tools for Circular Visualization in the Next-generation Genomic Sequencing Era

被引：4

作者：

Parveen, Alisha ^{[1
]}

Khurana, Sukant ^{[2
]}

Kumar, Abhishek ^{[3
]}

机构：

[1] Heidelberg Univ, Med Fac Mannheim, Med Res Ctr, Mannheim, Germany

[2] Cent Drug Res Inst Lucknow, Pharmacol Dept, Lucknow, Uttar Pradesh, India

[3] Christian Albrechts Univ Kiel, Dept Genet & Mol Biol Bot, Inst Bot, Kiel, Germany

来源：

CURRENT GENOMICS | 2019年 / 20卷 / 02期

关键词：

Circular visualization; Circos; Genomics; Next-generation sequencing; Data modeling; BLAST alignment; R PACKAGE; CIRCOS;

D O I：

10.2174/1389202920666190314092044

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

After human genome sequencing and rapid changes in genome sequencing methods, we have entered into the era of rapidly accumulating genome-sequencing data. This has derived the development of several types of methods for representing results of genome sequencing data. Circular genome visualization tools are also critical in this area as they provide rapid interpretation and simple visualization of overall data. In the last 15 years, we have seen rapid changes in circular visualization tools after the development of the circos tool with 1-2 tools published per year. Herein we have summarized and revisited all these tools until the third quarter of 2018.

引用

页码：90 / 99

页数：10

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