The crystal structure of L-lactate oxidase from Aerococcus viridans at 2.1 Å resolution reveals the mechanism of strict substrate recognition

被引:45
|
作者
Umena, Yasufumi
Yorita, Kazuko
Matsuoka, Takeshi
Kita, Akiko
Fukui, Kiyoshi
Morimoto, Yukio [1 ]
机构
[1] Kyoto Univ, Res Reactor Inst, Kumatori, Osaka 5900494, Japan
[2] Osaka Univ, Inst Prot Res, Suita, Osaka 5650871, Japan
[3] Univ Tokushima, Inst Enzyme Res, Tokushima 7708503, Japan
[4] Asahi Kasei Pharma, Fine Chem & Diagnost Div, Shizuoka 4102321, Japan
[5] RIKEN, Harima Inst, Spring 8, Mikazuki, Hyogo 6795148, Japan
关键词
X-ray structure analysis; lactate oxidase; flavoprotein; substrate recognition;
D O I
10.1016/j.bbrc.2006.09.025
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
L-Lactate oxidase (LOX) from Aerococcus viridans is a member of the alpha-hydroxyacid-oxidase flavoenzyme family. We have determined the three-dimensional structure of LOX and revealed the mechanism of substrate recognition. The LOX monomer structure has a typical alpha(8)/beta(8) motif commonly found in other flavin family proteins. A related enzyme, glycolate oxidase, catalyzes the oxidation of glycolate rather than lactate. Comparison of the two enzyme structures highlights the importance of five residues around the FMN prosthetic group of LOX. which act synergistically to discriminate between the L/D configurations of lactate. X-ray crystallography of LOX gave a space group 1422 of unit-cell parameters a = b = 191,096 angstrom, c = 194.497 angstrom and alpha = beta = gamma = 90 degrees with four monomers per asymmetric unit. The four independent monomers display slight structural differences around the active site. Diffraction data were collected, under cryogenic conditions to 2.1 angstrom resolution at the synchrotron facilities in Japan. (c) 2006 Elsevier Inc. All rights reserved.
引用
收藏
页码:249 / 256
页数:8
相关论文
共 46 条
  • [21] Crystal structure and substrate recognition mechanism of the prolyl endoprotease PEP from Aspergillus niger
    Miyazono, Ken-ichi
    Kubota, Keiko
    Takahashi, Kenji
    Tanokura, Masaru
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2022, 591 : 76 - 81
  • [22] Crystal Structure of Inorganic Pyrophosphatase From Schistosoma japonicum Reveals the Mechanism of Chemicals and Substrate Inhibition
    Wu, Qun-Feng
    Wang, Wei-Si
    Chen, Shen-Bo
    Xu, Bin
    Li, Yong-Dong
    Chen, Jun-Hu
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2021, 9
  • [23] Crystal Structure of Inorganic Pyrophosphatase From Schistosoma japonicum Reveals the Mechanism of Chemicals and Substrate Inhibition
    Wu, Qun-Feng
    Wang, Wei-Si
    Chen, Shen-Bo
    Xu, Bin
    Li, Yong-Dong
    Chen, Jun-Hu
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2021, 9
  • [24] Crystal structure of chitosanase from Bacillus circulans MH-K1 at 1.6-Å resolution and its substrate recognition mechanism
    Saito, J
    Kita, A
    Higuchi, Y
    Nagata, Y
    Ando, A
    Miki, K
    JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (43) : 30818 - 30825
  • [25] Crystal Structure of Chitosanase from Bacillus circulans MH-K1 at 1.6-A Resolution and Its Substrate Recognition Mechanism
    Saito, Jun-Ichi
    Kita, Akiko
    Higuchi, Yoshiki
    Nagata, Yoshiho
    Ando, Akikazu
    Miki, Kunio
    Journal of Biological Chemistry, 274 (43): : 30818 - 30825
  • [26] Crystal structure of Drosophila melanogaster tryptophan 2,3-dioxygenase reveals insights into substrate recognition and catalytic mechanism
    Huang, Wei
    Gong, Zhen
    Li, Jian
    Ding, Jianping
    JOURNAL OF STRUCTURAL BIOLOGY, 2013, 181 (03) : 291 - 299
  • [27] Copper amine oxidase from Hansenula polymorpha:: the crystal structure determined at 2.4Å resolution reveals the active conformation
    Li, RB
    Klinman, JP
    Mathews, FS
    STRUCTURE, 1998, 6 (03) : 293 - 307
  • [28] Crystal structure of LAAO from Calloselasma rhodostoma with an L-phenylalaniine substrate:: Insights into structure and mechanism
    Moustafa, Ibrahim M.
    Foster, Scoff
    Lyubimov, Artem Y.
    Vrielink, Alice
    JOURNAL OF MOLECULAR BIOLOGY, 2006, 364 (05) : 991 - 1002
  • [29] Sub-atomic resolution crystal structure of cholesterol oxidase: What atomic resolution crystallography reveals about enzyme mechanism and the role of the FAD cofactor in redox activity
    Lario, PI
    Sampson, N
    Vrielink, A
    JOURNAL OF MOLECULAR BIOLOGY, 2003, 326 (05) : 1635 - 1650
  • [30] The 1.8-Å crystal structure of a matrix metallaproteinase 8-barbiturate inhibitor complex reveals a previously unobserved mechanism for collagenase substrate recognition
    Brandstetter, H
    Grams, F
    Glitz, D
    Lang, A
    Huber, R
    Bode, W
    Krell, HW
    Engh, RA
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (20) : 17405 - 17412