Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees

被引:580
|
作者
Subramanian, Balakrishnan [1 ]
Gao, Shenghan [2 ]
Lercher, Martin J. [3 ,4 ]
Hu, Songnian [2 ]
Chen, Wei-Hua [1 ,5 ,6 ]
机构
[1] Huazhong Univ Sci & Technol, Dept Bioinformat & Syst Biol, Hubei Key Lab Bioinformat & Mol Imaging, Key Lab Mol Biophys,Minist Educ,Coll Life Sci & T, Wuhan 430074, Hubei, Peoples R China
[2] Chinese Acad Sci, BIG, CAS Key Lab Genome Sci & Informat, 7 Beitucheng West Rd, Beijing 100029, Peoples R China
[3] Heinrich Heine Univ, Inst Comp Sci, D-40225 Dusseldorf, Germany
[4] Heinrich Heine Univ, Dept Biol, D-40225 Dusseldorf, Germany
[5] HeNan Normal Univ, Coll Life Sci, Xinxiang 453007, Henan, Peoples R China
[6] Huazhong Univ Sci & Technol, Ezhou Ind Technol Res Inst, Ezhou 436044, Hubei, Peoples R China
关键词
TOOL; V2;
D O I
10.1093/nar/gkz357
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
EvoIview is an interactive tree visualization tool designed to help researchers in visualizing phylogenetic trees and in annotating these with additional information. It offers the user with a platform to upload trees in most common tree formats, such as Newick/Phylip, Nexus, Nhx and PhyloXML, and provides a range of visualization options, using fifteen types of custom annotation datasets. The new version of Evolview was designed to provide simple tree uploads, manipulation and viewing options with additional annotation types. The 'dataset system' used for visualizing tree information has evolved substantially from the previous version, and the user can draw on a wide range of additional example visualizations. Developments since the last public release include a complete redesign of the user interface, new annotation dataset types, additional tree visualization styles, full-text search of the documentation, and some backend updates. The project management aspect of Evolview was also updated, with a unified approach to tree and project management and sharing. Evolview is freely available at: https://www.evolgenius.info/evolview/.
引用
收藏
页码:W270 / W275
页数:6
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